[Fri Aug 26 16:32:20 2016] >Input file: TMH0Y6S7M1D.pdb >TM segments: 25-46_ 48-62 MAIDEN score = -11.9638 Below is the ranking list of the residue pairs and their related pseudo-energy (the lower, the better). This includes inter-chain residue pairs. The maximum (least favorable) pairwise energy value has been set to 10. See the MAIDEN software article: Postic,G., Ghouzam,Y. and Gelly,J.C. (2015) Biochimie, 115, 155–161. ----------- ---------------- Calpha pair Empirical energy ----------- ---------------- L26 -L31 0.687930078067675 L31 -F36 0.531080503528095 C43 -V52 0.466165515572452 F32 -I37 0.412831043327522 W45 -N51 0.379108390428428 G35 -A54 0.326656034771833 A53 -G59 0.316799442133969 S40 -A54 0.311012995716943 S40 -G46 0.286458720199334 V38 -Y56 0.278921813692723 P42 -Y56 0.267407985066697 F41 -G55 0.239935587736432 A53 -F60 0.218510240649233 G44 -V52 0.2007412692984 V34 -Y58 0.197454421709773 G28 -F36 0.167239699022156 L26 -G35 0.163420206009624 V34 -F41 0.153844571740096 S40 -Y56 0.153714513426114 G44 -G55 0.150606580822992 L27 -G35 0.13452321302178 G28 -G35 0.133280875954349 G35 -G59 0.13296587454849 L50 -Y58 0.130864328901781 I48 -Y56 0.130151310752511 L31 -V39 0.128111108900239 L26 -L62 0.127980066447143 G35 -P42 0.127791540694207 L26 -V34 0.125293882031086 V49 -A54 0.124379985487813 G35 -A53 0.118866483738532 F32 -Y56 0.115821518757736 V34 -G55 0.113420507158273 G46 -A53 0.108062272349914 S25 -V61 0.107833651989548 V39 -V49 0.106775758717644 V39 -G59 0.105371167456689 G44 -A54 0.104772289484266 L30 -G35 0.0996648609604922 V38 -V52 0.0975864613197217 C43 -L57 0.0962043895613043 C43 -A53 0.0903389988201745 N51 -Y56 0.0893464474779133 V34 -P42 0.0890948761103534 F36 -A54 0.0872272315856559 V39 -A53 0.0866715288950122 G55 -V61 0.0843745446109768 S40 -A53 0.0830413702326691 L31 -L62 0.0809103427979778 V39 -G55 0.07958485290788 G46 -A54 0.0793409060343446 P42 -Y58 0.0789353644564099 S25 -L31 0.0781975793649767 G46 -G55 0.076334203369075 G35 -G44 0.0740352926563619 I37 -V52 0.0740313849847722 L26 -F32 0.070568912889355 L31 -G59 0.0681412164531197 V33 -C43 0.0666468221805281 F36 -Y56 0.0664652723258152 I37 -G55 0.0659941436261535 F32 -Y58 0.063875714698983 N51 -Y58 0.0608223223536908 P42 -V49 0.0598368048208764 L30 -V39 0.0558449374813792 V38 -G46 0.0522321880129211 V33 -G55 0.0515696974378441 S25 -G35 0.0502229047819613 G44 -A53 0.048460645851514 V33 -Y58 0.0475076189393731 C43 -Y58 0.0469856501247334 G35 -L57 0.0459145462755415 F41 -A53 0.0454550334381318 L26 -F60 0.0441964953733374 F41 -I48 0.0405475430514421 V39 -L57 0.0394932915563828 A54 -L62 0.0355684950818118 V38 -N51 0.0329067315278304 V29 -V39 0.0325898490001215 A54 -V61 0.025838000926802 V39 -I48 0.0231468881157406 I37 -Y58 0.0203514995779894 I48 -G55 0.0193989383392817 F32 -G55 0.0186035663692223 V39 -N51 0.018006566343316 I37 -W45 0.0177508678657112 L31 -G55 0.015947289984747 F36 -G44 0.0157722731934387 V38 -G59 0.0157419379318604 L26 -G59 0.013152209755626 V38 -A53 0.0127834887249403 G35 -C43 0.0122817376570848 V38 -A54 0.0105379401843034 P42 -N51 0.00941478816190244 W45 -V52 0.00762323905386619 I48 -A53 0.00752401767971556 F41 -V52 0.00717553059778209 F32 -G59 0.00416430793325917 F41 -Y56 -0.000653816362387261 G44 -L50 -0.00305895600500294 V49 -G55 -0.00329782964155445 V39 -G46 -0.00398196935251072 F36 -N51 -0.00754686950524963 W45 -A54 -0.00858162150675557 S40 -V49 -0.00932898919347602 V52 -G59 -0.0157927961665809 V33 -F41 -0.0166308149179102 F41 -L50 -0.0166547213908039 A53 -V61 -0.0178701626534425 F36 -W45 -0.0185986122687627 Y56 -L62 -0.0187288324418162 G44 -V49 -0.0195357876676763 V49 -Y58 -0.0208217870952097 V38 -Y58 -0.0208277271045416 V34 -G59 -0.0215670695956467 S25 -F36 -0.0220929265517716 L30 -F36 -0.0230731578329779 F36 -V52 -0.0240389412873758 I37 -P42 -0.024826326640824 P42 -L57 -0.0283463095483487 F36 -Y58 -0.0328433729248543 G35 -N51 -0.0394291107034199 G35 -V52 -0.0402900501421231 P42 -A53 -0.0403247107776776 V29 -V38 -0.0437510900643356 S40 -W45 -0.0487861973578282 F36 -L57 -0.0494436165252488 L31 -L57 -0.0535059356193681 C43 -V49 -0.0539275722743078 S25 -V34 -0.0551844831145591 F41 -N51 -0.0559764299523837 L26 -F36 -0.0575432715684192 F36 -G59 -0.0591281873305469 V52 -Y58 -0.0631765244737208 F32 -F41 -0.0653287595613694 W45 -L50 -0.0659638223677756 N51 -G59 -0.0660089637352392 V33 -P42 -0.0667092978672044 I37 -Y56 -0.0678989657045095 G35 -Y56 -0.0683396340315752 L31 -S40 -0.0710071981795486 S25 -V33 -0.0756861561555757 G28 -Y58 -0.0756872215159574 Y56 -V61 -0.0792741761651725 W45 -G55 -0.0794844889569539 I37 -A54 -0.0818699924718782 V29 -I37 -0.0819107456830483 G35 -F60 -0.0878410596553367 L30 -Y58 -0.088159745744937 G55 -L62 -0.088802417196991 F41 -A54 -0.0895289995371318 F36 -G55 -0.0929138287646971 S25 -L57 -0.0930385025294465 G55 -F60 -0.0952246796017704 L26 -Y58 -0.0986060181993187 S40 -L50 -0.101260071408564 F36 -A53 -0.101377387589977 L26 -V33 -0.102977353329551 G44 -N51 -0.106763655684873 S40 -I48 -0.106839158821288 F32 -L57 -0.107048134020603 V38 -L57 -0.110228959095701 I37 -G44 -0.110620211027925 G46 -V52 -0.112126579614609 I37 -N51 -0.112846644063508 P42 -V52 -0.113401805998409 V38 -G44 -0.115581924360886 L27 -F36 -0.115792399078674 G28 -I37 -0.118074781974693 G35 -G55 -0.119223955326502 S25 -F32 -0.120156900399744 F32 -S40 -0.12141254268122 S40 -G55 -0.1257370385477 F41 -V49 -0.128453490361763 L31 -F60 -0.128952075060325 V38 -W45 -0.129811977981951 S40 -L57 -0.130537434619967 P42 -A54 -0.131287066879769 V34 -C43 -0.13544280200936 V52 -F60 -0.136533108687217 W45 -A53 -0.13742168771111 G28 -V34 -0.139278675296303 V38 -G55 -0.139800332773421 G35 -Y58 -0.14281807659136 L31 -Y56 -0.14295283468303 V33 -V38 -0.148575600047396 S25 -G59 -0.150329644553026 L27 -V34 -0.153002359790264 V29 -G35 -0.155020384904784 S40 -Y58 -0.157024342501123 F41 -G46 -0.158562168076918 C43 -A54 -0.158644899221514 G46 -N51 -0.162086058914589 G35 -F41 -0.162628090447368 L30 -I37 -0.164760887232307 S25 -F60 -0.165564131447567 C43 -I48 -0.169648462076839 L31 -Y58 -0.171766919888794 S25 -Y58 -0.172753696336382 A54 -F60 -0.174228000830184 C43 -G55 -0.175406760082672 S25 -L30 -0.190281580773138 L50 -L57 -0.191605068421933 S25 -L62 -0.19757988610319 F36 -P42 -0.199728782773398 A54 -G59 -0.202063041431985 V39 -L50 -0.208552621041809 I37 -C43 -0.210357521839524 L30 -V38 -0.212110284585838 N51 -L57 -0.221141904734242 P42 -I48 -0.221211569372568 V49 -L57 -0.224121402367561 V39 -V52 -0.22531348537588 I48 -A54 -0.226958288118924 V39 -G44 -0.227664108238637 G28 -V33 -0.237772859568305 L50 -Y56 -0.245300861961739 G35 -S40 -0.245845241724998 L50 -G55 -0.249272047863833 P42 -G55 -0.249785992226034 L31 -V38 -0.253283213979235 A53 -Y58 -0.259404706254283 C43 -N51 -0.264729415498469 V33 -V39 -0.272744378967958 V39 -Y58 -0.273366553424084 C43 -Y56 -0.28385011496712 L57 -L62 -0.285497023827393 C43 -L50 -0.286117878531522 V29 -F36 -0.290547681813566 V52 -L57 -0.293149446129348 V34 -V39 -0.293418699674027 V34 -S40 -0.29419893642266 L27 -V33 -0.295503387217263 V38 -C43 -0.304770300947858 V29 -V34 -0.305370178450096 V33 -S40 -0.305376493078349 S40 -N51 -0.31026791743585 S40 -V52 -0.310270961761599 F32 -V38 -0.314164548698945 L27 -F32 -0.333391754180751 F32 -V39 -0.362361391842295 V39 -Y56 -0.367122668797338 V49 -Y56 -0.382410177077154 L31 -I37 -0.391093887849367 V39 -W45 -0.397662750915705 F36 -F41 -0.436177637973204 V39 -A54 -0.4458561067995 P42 -L50 -0.466632652430603 F36 -C43 -0.81330915363904