[Fri Aug 26 16:37:56 2016] >Input file: TMH1SDC2M2D.pdb >TM segments: 8-22_ 49-60_ 87-103_ 127-144 MAIDEN score = -27.7468 Below is the ranking list of the residue pairs and their related pseudo-energy (the lower, the better). This includes inter-chain residue pairs. The maximum (least favorable) pairwise energy value has been set to 10. See the MAIDEN software article: Postic,G., Ghouzam,Y. and Gelly,J.C. (2015) Biochimie, 115, 155–161. ----------- ---------------- Calpha pair Empirical energy ----------- ---------------- L8 -Q93 0.900721435268533 L13 -Q93 0.819691027908046 V22 -Y53 0.727300643995695 G14 -V54 0.682326004869985 A12 -Q93 0.673476363768257 L17 -E57 0.628176173081789 V22 -V49 0.602474427023873 L18 -V54 0.551497456634392 A16 -M98 0.55104870266082 L8 -Y89 0.509774627343746 A16 -L99 0.50664836656312 L137 -R142 0.493773693839081 L8 -P88 0.458458255171475 L17 -Y53 0.456526922770037 E129 -A134 0.417471695385634 P88 -Q93 0.412397928702235 L17 -V22 0.389238379277774 A12 -A97 0.365604053832515 Y53 -V58 0.359590993381005 A12 -L94 0.356152978559962 L19 -A101 0.356078631555053 T15 -L94 0.348952317936884 G14 -Q93 0.343361666722868 Y53 -G100 0.342985733739714 A12 -L95 0.338435777474174 L17 -G100 0.329087785856589 L18 -A97 0.31674810012563 I127 -A132 0.304911148090329 L17 -V54 0.301758387616401 G14 -V58 0.299829711446264 A16 -L95 0.295641101179833 V22 -G50 0.292109765819157 L17 -A97 0.278835483955688 E11 -L95 0.278571791611028 A20 -L103 0.278150662536413 G14 -L52 0.277923547000365 E11 -L94 0.277543627837877 G50 -E57 0.273615663067963 A16 -V21 0.261516002577292 A20 -A97 0.25434540065099 V22 -G51 0.249535482015927 A16 -G50 0.243612553932635 L52 -E57 0.242880277025051 T15 -P88 0.233672435223116 V21 -M98 0.214391992687758 G14 -G51 0.214307639958799 L19 -G100 0.211035417418028 G14 -I56 0.188702716820333 L52 -V58 0.187516487909833 L19 -G51 0.185072265622841 A10 -G60 0.184037013047697 E11 -Y53 0.182695948487038 I127 -G135 0.180246909850423 G96 -L103 0.179205562872776 V21 -I56 0.177079204885372 L137 -P144 0.175256607332724 V21 -E57 0.174208791102073 V21 -V49 0.164337853477258 L18 -G50 0.161787878052225 G50 -A132 0.161366679539935 E11 -V54 0.160541804239934 E11 -A16 0.158519078946867 A10 -E57 0.156000023663873 A16 -Q93 0.155514398245171 A12 -A20 0.154143809592277 G9 -G60 0.153824754447549 T15 -G60 0.152448742747433 T15 -G51 0.144336580633351 A16 -V58 0.14315211156834 A134 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