[Mon Aug 29 16:51:57 2016] >Input file: TMH1ZZK8M1G.pdb >TM segments: 320-335_ 349-363 MAIDEN score = -12.4448 Below is the ranking list of the residue pairs and their related pseudo-energy (the lower, the better). This includes inter-chain residue pairs. The maximum (least favorable) pairwise energy value has been set to 10. See the MAIDEN software article: Postic,G., Ghouzam,Y. and Gelly,J.C. (2015) Biochimie, 115, 155–161. ----------- ---------------- Calpha pair Empirical energy ----------- ---------------- P326 -S334 0.366056065310755 S334 -G354 0.295564863187864 G328 -A335 0.239263171060498 A329 -A335 0.224230692477548 G354 -Y362 0.185170673255698 A335 -I351 0.169238705079369 A327 -A335 0.131636663125637 R349 -S357 0.129598663568136 T320 -P326 0.128554837078272 T320 -G328 0.123146621745737 V331 -G354 0.110396332449617 L325 -V331 0.0831350722714266 L322 -A327 0.0660969585677407 A335 -L353 0.066093937225479 S334 -I351 0.0653672531322076 A327 -G361 0.0627535157034265 V331 -M358 0.0605060114930378 L330 -M358 0.0512459949949375 A335 -F355 0.0504519441548985 L353 -A363 0.0482196009017493 S334 -S357 0.043523142695141 R349 -G354 0.0409678191721352 A335 -V352 0.028733452493606 A335 -L350 0.0266388595992302 V331 -G361 0.0190066447925714 A321 -A329 0.0166804728850685 A335 -M358 0.0141144583546304 F355 -A363 0.0102880145648445 F324 -A332 0.00490818697091688 V352 -L360 0.000867244694797265 I351 -V359 -0.00512806388249665 L353 -G361 -0.00758787085442236 A323 -V331 -0.00827319726127573 V352 -S357 -0.00846905972613987 A321 -V331 -0.0198221322493657 A335 -G354 -0.0258818617624286 F355 -Y362 -0.0326130969620237 L330 -A335 -0.0332652352457639 T320 -A329 -0.0420364865583531 S334 -M358 -0.045990856306636 G354 -A363 -0.060673213434393 L353 -Y362 -0.0659997919507471 I351 -L360 -0.0670768797310792 A323 -A332 -0.0770292377947916 A321 -G328 -0.0779040501474655 S334 -F355 -0.0804172741449549 S334 -L350 -0.0892125684346516 V331 -S357 -0.0902261214214508 A356 -Y362 -0.0913114054295018 P326 -A332 -0.0932445367526427 S334 -L353 -0.0941765593191519 V352 -G361 -0.102116192172897 L350 -M358 -0.103041574102243 G328 -S334 -0.103863996799122 L322 -L330 -0.104620252715458 L322 -V331 -0.104735978118498 L350 -V359 -0.10551932901837 R349 -F355 -0.110906011614183 A335 -S357 -0.12155168228364 T320 -A327 -0.127750531637504 F324 -L333 -0.129306359799198 S357 -A363 -0.131428023585444 S357 -Y362 -0.132540570379911 V331 -F355 -0.137025010647899 A323 -L330 -0.138320292766311 A321 -L330 -0.155566847997152 L350 -A356 -0.165567280868103 G354 -G361 -0.171541693661086 A356 -A363 -0.172671898126798 P326 -V331 -0.177493148178314 F355 -G361 -0.179439241795123 R349 -M358 -0.183312109651022 A327 -S334 -0.186529233726533 L325 -S334 -0.18801274236573 L353 -L360 -0.191190360016526 L350 -S357 -0.191679430846524 L325 -A332 -0.202669471230639 A323 -A329 -0.21982027375715 A321 -A327 -0.226033152127161 L325 -L333 -0.233283151440633 G354 -V359 -0.238826446478493 F324 -L330 -0.248305844233676 L322 -A329 -0.249400336472934 R349 -A356 -0.25168235912263 M358 -A363 -0.25492025482056 V352 -V359 -0.283912020260933 F324 -V331 -0.300789329962233 T320 -L325 -0.304830777035701 A327 -L333 -0.306549529848941 L353 -M358 -0.308299479914158 L350 -F355 -0.3090029929861 L325 -L330 -0.3189187830714 G328 -L333 -0.328389294191911 V352 -M358 -0.328822060320953 G354 -L360 -0.332089872860708 F355 -L360 -0.345487557432753 L322 -G328 -0.345856013627103 I351 -M358 -0.347888172491554 I351 -S357 -0.352883485668719 L353 -V359 -0.3905547446727 P326 -L333 -0.391126145524801 I351 -A356 -0.397982507682061 A327 -A332 -0.410774085062136 A321 -P326 -0.434292909339922 F324 -A329 -0.438697922314016 A323 -G328 -0.482543911036303 A356 -G361 -0.484279357107632 A329 -S334 -0.506239006794488