[Mon Aug 29 16:55:31 2016] >Input file: TMH2Q489M1G.pdb >TM segments: 120-143 MAIDEN score = -12.2750 Below is the ranking list of the residue pairs and their related pseudo-energy (the lower, the better). This includes inter-chain residue pairs. The maximum (least favorable) pairwise energy value has been set to 10. See the MAIDEN software article: Postic,G., Ghouzam,Y. and Gelly,J.C. (2015) Biochimie, 115, 155–161. ----------- ---------------- Calpha pair Empirical energy ----------- ---------------- V136 -G143 0.217468839141971 L135 -G143 0.179433568989121 G134 -G143 0.175850709648518 N120 -S127 0.14363064169326 A126 -G134 0.104187693804068 N120 -L125 0.0953251879629802 L125 -L133 0.0903804810975108 L129 -L139 0.0864752544969658 L133 -G141 0.0532613169903708 R121 -S127 0.0524683127234555 L133 -L139 0.0492595521143596 L132 -G141 0.0368168743362065 S127 -L135 0.0315757124065268 L125 -G134 0.0258214217617225 L132 -V142 0.02345997617452 R121 -F128 -0.00297316521482593 L125 -L132 -0.0101930952521294 R122 -L129 -0.0455320655192102 I138 -G143 -0.0484782772101671 A126 -L133 -0.0616899438172602 N120 -A126 -0.0626239544264222 L131 -L139 -0.0633045337749465 R122 -S127 -0.066437426617536 F128 -V136 -0.070274589655908 L133 -V142 -0.0908182225567939 L125 -L130 -0.0951088257387021 L129 -I138 -0.0955257981302742 V123 -L131 -0.102441991235111 L131 -V140 -0.104235095525922 V124 -L132 -0.104838794312345 S127 -V136 -0.107103791707498 V136 -G141 -0.113359655316509 L130 -I138 -0.116005583020942 F128 -L137 -0.120756027892202 G134 -G141 -0.128679753091246 R122 -L130 -0.130873684422625 G134 -V142 -0.139802320372501 L129 -L137 -0.140169221789675 R121 -L129 -0.140631189935491 S127 -G134 -0.144553412366736 L130 -L139 -0.150370369197561 L135 -G141 -0.153438694385368 L130 -L137 -0.160268665602598 N120 -F128 -0.161122222063206 A126 -L135 -0.16174325310617 L137 -G143 -0.164029986334265 L129 -V136 -0.165408800075987 V136 -V142 -0.169161901010375 G134 -V140 -0.171323314349666 V124 -L130 -0.172655718811975 L133 -V140 -0.17961911302222 F128 -L135 -0.181778196478934 F128 -G134 -0.187873040421426 R121 -A126 -0.194053027741863 L135 -V142 -0.203556334671543 L131 -I138 -0.213303909361567 V124 -L131 -0.218819395327551 V123 -L130 -0.225749121749808 R122 -F128 -0.227627512418292 L132 -V140 -0.229412589109567 L130 -V136 -0.25639146847826 A126 -L131 -0.266062948139554 L132 -I138 -0.269390202813204 V123 -L129 -0.269639867710201 L129 -L135 -0.302309864038159 A126 -L132 -0.305459068064842 V124 -L129 -0.311480543898929 V123 -F128 -0.318366456147682 L137 -V142 -0.323161373613086 S127 -L133 -0.324159243433543 L131 -V136 -0.349159662787901 S127 -L132 -0.35492773436085 L133 -I138 -0.356388580719051 L132 -L137 -0.370689742533239 F128 -L133 -0.375051091955209 L132 -L139 -0.387963934814561 L129 -G134 -0.388437900214582 L130 -L135 -0.388744662615687 L125 -L131 -0.4031799400314 G134 -L139 -0.421047456859026 L135 -V140 -0.431736733753461 L131 -L137 -0.468986591964209