[Fri Aug 26 16:58:15 2016] >Input file: TMH3E2D3M2D.pdb >TM segments: 245-276_ 278-304 MAIDEN score = -19.8648 Below is the ranking list of the residue pairs and their related pseudo-energy (the lower, the better). This includes inter-chain residue pairs. The maximum (least favorable) pairwise energy value has been set to 10. See the MAIDEN software article: Postic,G., Ghouzam,Y. and Gelly,J.C. (2015) Biochimie, 115, 155–161. ----------- ---------------- Calpha pair Empirical energy ----------- ---------------- I268 -I289 1.54647011241921 F276 -K282 1.20280160711575 V275 -K282 0.896827692773525 V275 -F285 0.737322175408873 T272 -F285 0.555610250072402 L261 -F296 0.536288444536512 K282 -I287 0.505105783829232 L271 -I289 0.48025760718482 F297 -D302 0.46674317505062 I268 -L293 0.458708942522867 L271 -F285 0.398228919063063 D280 -F285 0.38319486668389 F257 -I262 0.379474231340362 C259 -P264 0.373933964182382 V275 -S286 0.37045752937215 C259 -F297 0.323540454868184 C265 -I287 0.319909705854162 F256 -L261 0.304412961000487 C265 -I301 0.298101732530287 P264 -T272 0.294696500328331 V275 -D280 0.288300592736917 C265 -L293 0.26102712663044 C265 -T273 0.256623068489159 S269 -I289 0.253203302603715 C265 -V299 0.246356258340195 T272 -T294 0.243119618488242 L267 -T292 0.235590511738918 S269 -K282 0.232102960047794 L255 -P264 0.231094357424597 C265 -F285 0.216557964050269 F274 -K282 0.215185230633743 H281 -S288 0.212515634223556 T258 -P264 0.211287007660891 T258 -I263 0.208501891159164 I263 -T292 0.204820237363625 I262 -T292 0.195756246557359 I268 -T292 0.195695271740526 T272 -L278 0.190431368211367 C259 -L267 0.182480716515286 V295 -D302 0.155552469242712 R252 -C259 0.150329717035905 I270 -I289 0.144720172794585 L278 -T284 0.14377657938709 L271 -S286 0.142927221093078 V275 -S288 0.140030120672714 N260 -L298 0.1397835279715 F256 -C265 0.135460857167718 S269 -V291 0.135282735695053 V275 -H281 0.134656317538496 T294 -D302 0.129923538032668 I270 -T292 0.129856924101695 N260 -T294 0.129214398587995 I283 -S288 0.127406742226222 I268 -T284 0.126951528240218 F274 -S288 0.126466407417471 L267 -T272 0.126106825812318 I268 -I287 0.124836742008913 P264 -V291 0.122586217923703 R251 -F257 0.118678029795999 L271 -T292 0.117889602765619 C265 -S286 0.117349067956667 T273 -H281 0.117164661167674 L278 -S286 0.113763457532049 L261 -L303 0.110271362218849 L271 -L293 0.106870970349214 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