[Mon Aug 29 17:06:54 2016] >Input file: TMH3E2D3M4G.pdb >TM segments: 71-90_ 220-235 MAIDEN score = -0.8671 Below is the ranking list of the residue pairs and their related pseudo-energy (the lower, the better). This includes inter-chain residue pairs. The maximum (least favorable) pairwise energy value has been set to 10. See the MAIDEN software article: Postic,G., Ghouzam,Y. and Gelly,J.C. (2015) Biochimie, 115, 155–161. ----------- ---------------- Calpha pair Empirical energy ----------- ---------------- A226 -S234 0.275547669505162 T84 -W90 0.247668125457771 A226 -S233 0.21527816113101 T224 -A229 0.186638050857537 A226 -Y232 0.162820480844753 H228 -S234 0.141268470642436 R227 -S233 0.117177931207095 L220 -A226 0.115800187805137 W83 -L88 0.10056879760767 T224 -V230 0.0780760243330443 S225 -S234 0.0752845396085231 T224 -L231 0.0659054334538944 L221 -A226 0.0451205629977784 S225 -L231 0.0348070733555563 A226 -C235 0.0167535239211727 K82 -L88 0.0129302488792042 L223 -L231 0.00462467889887463 A229 -S234 -0.0331544509880146 A226 -L231 -0.0345040454216823 D85 -W90 -0.0351568703529785 R227 -Y232 -0.0582355172846949 S225 -Y232 -0.0588229874426678 L220 -S225 -0.0596269341447766 L223 -V230 -0.0707015180511954 R227 -S234 -0.0896517801439851 S222 -R227 -0.106719832640614 W83 -V89 -0.119660771332919 T84 -V89 -0.125179345437114 A229 -C235 -0.128946106084852 H228 -S233 -0.138978896124102 K82 -V89 -0.179472500231099 H228 -C235 -0.182022911764458 S225 -V230 -0.250573951730166 V230 -C235 -0.314120682578322 K82 -K87 -0.3281458867329 R227 -C235 -0.449699963966951