[Mon Aug 29 17:17:13 2016] >Input file: TMI0RR16M1G.pdb >TM segments: 846-880_ 892-905 MAIDEN score = 16.5642 Below is the ranking list of the residue pairs and their related pseudo-energy (the lower, the better). This includes inter-chain residue pairs. The maximum (least favorable) pairwise energy value has been set to 10. See the MAIDEN software article: Postic,G., Ghouzam,Y. and Gelly,J.C. (2015) Biochimie, 115, 155–161. ----------- ---------------- Calpha pair Empirical energy ----------- ---------------- G871 -M878 10 A859 -I898 1.9912507329411 V866 -S894 1.21660240918105 A859 -V866 0.926352454030543 V866 -I898 0.82128514173991 T868 -F874 0.795883112653477 V867 -F876 0.787708234679345 V867 -I898 0.766151262553114 L872 -M878 0.680994021586635 I857 -G865 0.674413899067512 A869 -F892 0.673553937443065 V866 -F892 0.671981736030105 M860 -V867 0.671449371904098 V873 -M878 0.640896369545739 M860 -I898 0.611347997858763 R858 -L901 0.60341497022067 G871 -F876 0.602398308044945 V867 -A875 0.595123544997663 R858 -S863 0.576776447261091 R858 -G893 0.576552422962062 T868 -F876 0.562209350720117 F874 -A879 0.496633663048745 A869 -T877 0.49544534932107 A859 -M902 0.488472743667411 A870 -M878 0.479404384261958 R858 -I898 0.462368803171023 Y856 -A861 0.457108501236513 S863 -F892 0.44239664396013 A861 -T868 0.441237171260811 R858 -V866 0.427341906005314 L872 -T877 0.406611008328008 M860 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