[Mon Aug 29 17:22:23 2016] >Input file: TMI2UR38M1G.pdb >TM segments: 397-428_ 525-532 MAIDEN score = 7.3874 Below is the ranking list of the residue pairs and their related pseudo-energy (the lower, the better). This includes inter-chain residue pairs. The maximum (least favorable) pairwise energy value has been set to 10. See the MAIDEN software article: Postic,G., Ghouzam,Y. and Gelly,J.C. (2015) Biochimie, 115, 155–161. ----------- ---------------- Calpha pair Empirical energy ----------- ---------------- R399 -P404 10 I398 -L405 1.2195082244971 E397 -L405 0.719129141856371 L400 -L405 0.657291072297967 L405 -H410 0.485064167281315 I398 -P404 0.484919320260032 R403 -L408 0.375473197110304 H410 -Q415 0.308730414903554 L408 -L413 0.301806911410892 L405 -L413 0.301187756873156 G402 -S407 0.277451868358713 E397 -R403 0.272766357935696 D401 -V417 0.270257081604357 L400 -T527 0.229251714537831 M419 -V425 0.214269620724654 P404 -H410 0.20969283473339 V420 -V530 0.200538267965994 I398 -S406 0.197588349454522 S411 -M419 0.184949962637 E397 -H410 0.171808468962249 D401 -T527 0.165479626527173 H525 -V530 0.154895321803472 D401 -R414 0.154298817833132 L400 -S409 0.15044138983114 S409 -G416 0.144931872388938 S406 -A412 0.139868525008101 V417 -V530 0.137131472063188 H410 -V417 0.128753733569361 V420 -V426 0.11367293505934 R403 -A412 0.111440892723332 R403 -R414 0.110068356543176 G402 -G416 0.102909086995002 V417 -H525 0.102819124326337 P404 -A412 0.101035292556328 L400 -L528 0.0974856831090092 G416 -V529 0.0956981418498435 R399 -G416 0.0904747829591965 L400 -A412 0.0903162943469691 E397 -P404 0.0897627915980895 D401 -S407 0.0853049571259137 R403 -S409 0.0844075873340744 L400 -R414 0.0724293782830119 L400 -Q415 0.0701157333118543 D401 -L408 0.0682707618728879 M419 -T527 0.0676587995308405 P404 -S411 0.0667851004286728 A412 -A418 0.0650830229303052 I398 -A412 0.0629648651214723 A418 -H525 0.0608308143725524 L405 -V417 0.0589807999680012 E397 -S406 0.0584019740982979 L405 -G416 0.0572961934011492 G416 -L528 0.0572671483555574 S406 -S411 0.0555983833179496 R414 -V420 0.0531275588967838 E397 -L408 0.0511410191937012 D401 -S406 0.0491728894253969 P404 -G416 0.0420261633657883 E397 -S407 0.0419990775016883 G416 -H525 0.0413775177992445 M419 -T526 0.0390850623771128 S411 -A418 0.0383981621722675 D401 -T526 0.0378742699730035 R403 -G416 0.0372578101513996 L400 -T526 0.0367116848420537 L400 -H410 0.0307957408076147 G416 -T526 0.030130981404072 G416 -T527 0.0287926959309794 R399 -V417 0.028467466619349 G402 -L408 0.0273541087433058 V420 -A532 0.026539193007765 D401 -A412 0.0178489254898913 P404 -R414 0.0175904443292509 L400 -V529 0.0175729983942983 L405 -Q415 0.0150632746975932 I398 -R403 0.0141253933179404 V417 -I531 0.0126377932319457 I398 -H410 0.0104519157756914 Q422 -V529 0.00954183901757677 L408 -G416 0.00861877301608915 I398 -V529 0.00773451463756736 A418 -P424 0.00685506745692521 G402 -T527 0.00179466428067676 R399 -S406 0.00169875127334018 S409 -V417 -0.000778422190149008 D401 -G416 -0.00373734383726454 A418 -V530 -0.00402848670800604 A412 -M419 -0.00427288502784151 M419 -A532 -0.00507518086985836 V420 -T527 -0.00712547446944822 Q421 -V529 -0.00994450568890271 A418 -I531 -0.0144599033793238 L413 -M419 -0.0175616611597045 Q415 -T527 -0.0180986920431931 G402 -L413 -0.0206855011852394 Q421 -V426 -0.0217510139619876 Q415 -T526 -0.0301905647231406 D401 -L413 -0.0314542805234034 Q422 -V530 -0.0344562591658075 S406 -G416 -0.0346028830113001 S407 -G416 -0.0346028830113001 E397 -G402 -0.0367075218634181 R399 -A412 -0.0400862426219932 R399 -T527 -0.0416276398258277 R399 -R414 -0.0425651435292524 Q421 -A532 -0.043325930129972 A412 -V417 -0.0435246882319058 V420 -T526 -0.0439476152603779 S407 -R414 -0.0448231222979873 L400 -V417 -0.0480336579383085 Q421 -I531 -0.0514933694152564 R414 -T527 -0.0519477007063263 I398 -L413 -0.0537143474045325 M419 -H525 -0.0542480829839138 Q415 -V420 -0.0549553487048544 Q415 -L528 -0.056565081128463 D401 -Q415 -0.0590937994015159 Q422 -I531 -0.065536165862258 V420 -V425 -0.0668101896619415 Q421 -L528 -0.0684823168336587 Q422 -A532 -0.0692399265440686 R399 -S409 -0.0718399556660476 S406 -R414 -0.0728999225458651 I398 -G416 -0.0743858811192135 S409 -Q415 -0.076545800180806 L400 -S411 -0.0829049872333307 L405 -S411 -0.0857634771133657 D423 -I531 -0.0871677234764019 R399 -S407 -0.0915381878478553 I398 -L408 -0.0935135501477886 L413 -T527 -0.0943834703972567 P404 -L413 -0.0963739570114939 I398 -S409 -0.0984202437989627 L408 -Q415 -0.0996522067574359 L408 -V417 -0.104421779990187 A418 -L528 -0.106758413865794 S409 -R414 -0.107271903034154 R414 -L528 -0.11018240842045 R403 -L413 -0.111590656406506 A418 -T527 -0.11598779660606 L400 -A418 -0.118795082306201 I398 -V417 -0.131586450958213 D401 -L528 -0.13547761525129 A418 -D423 -0.141068969827415 D423 -A532 -0.14650385387362 M419 -I531 -0.14848996162901 M419 -V529 -0.149500388791301 H410 -G416 -0.152348991482505 V417 -T527 -0.156526041466794 A418 -T526 -0.156756745375457 H410 -A418 -0.157842388175244 E397 -L413 -0.162858210312626 I398 -R414 -0.163276189688137 S411 -G416 -0.16400362551876 M419 -P424 -0.166272843956148 L408 -R414 -0.168525923709593 L413 -A418 -0.172463101354754 S407 -A412 -0.172696099330109 I398 -S407 -0.174459745268698 V420 -I531 -0.178815507826016 A418 -V529 -0.183843558851099 R399 -L408 -0.185641065051088 L400 -L408 -0.187441042563583 L400 -S406 -0.187939625926076 S407 -L413 -0.189206048145369 L405 -A412 -0.190295976646372 L405 -R414 -0.191846360104138 R399 -L413 -0.192686272114762 V417 -T526 -0.194138227474805 R403 -H410 -0.197460531802717 L400 -S407 -0.204029307621512 P404 -S409 -0.213592047202104 R399 -H410 -0.216325496639246 V420 -H525 -0.220637336605289 L400 -G416 -0.229614850230654 R414 -M419 -0.233822672200188 V417 -L528 -0.236910427070555 R414 -V529 -0.259635103082842 Q421 -V530 -0.276130088003251 D423 -V530 -0.278397076907484 V420 -L528 -0.285150633864323 V417 -V529 -0.310004557545039 S406 -L413 -0.341422725157094 L400 -L413 -0.348927067688848 V420 -V529 -0.35314085413003 S411 -V417 -0.358798442681851 M419 -V530 -0.365042841616486 R399 -L405 -0.405622241626029 M419 -L528 -0.481802740722074