[Mon Aug 29 17:38:04 2016] >Input file: TMI3CQS7M1G.pdb >TM segments: 6-27_ 47-74 MAIDEN score = -16.6248 Below is the ranking list of the residue pairs and their related pseudo-energy (the lower, the better). This includes inter-chain residue pairs. The maximum (least favorable) pairwise energy value has been set to 10. See the MAIDEN software article: Postic,G., Ghouzam,Y. and Gelly,J.C. (2015) Biochimie, 115, 155–161. ----------- ---------------- Calpha pair Empirical energy ----------- ---------------- V10 -F59 0.968761213125376 V21 -D49 0.795378161892845 L17 -A48 0.664075592708435 C7 -F62 0.659140094494655 T18 -H52 0.56615621586794 H55 -P60 0.415959554726444 F62 -L67 0.343843001767715 C7 -E57 0.338038363674258 L17 -H52 0.337845228314272 W6 -M14 0.316349363912884 C7 -F59 0.289425189170174 T18 -A48 0.287215183423628 L17 -A51 0.282336385807648 A20 -A48 0.27467841292294 L67 -G73 0.254471198157614 Y24 -D49 0.241321389608228 A11 -A58 0.240750965911447 P60 -L67 0.237989157459291 G12 -F59 0.233622429562379 L17 -D49 0.227683369879534 R47 -H52 0.223144690352397 A51 -F59 0.219228878996532 P15 -H55 0.212488621977895 K23 -R47 0.208137007712947 L9 -P60 0.20472599604337 H52 -P60 0.193448284856787 E57 -A64 0.184400453301574 L67 -V72 0.184339689745769 C7 -Q70 0.182986999356749 A11 -F59 0.182920946304071 C7 -H55 0.176403963920429 R26 -D49 0.176392199009222 R27 -D49 0.176229664384741 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