[Mon Aug 29 17:45:45 2016] >Input file: TMI6XQ27M4G.pdb >TM segments: 339-376 MAIDEN score = 8.5287 Below is the ranking list of the residue pairs and their related pseudo-energy (the lower, the better). This includes inter-chain residue pairs. The maximum (least favorable) pairwise energy value has been set to 10. See the MAIDEN software article: Postic,G., Ghouzam,Y. and Gelly,J.C. (2015) Biochimie, 115, 155–161. ----------- ---------------- Calpha pair Empirical energy ----------- ---------------- W355 -N360 10 L368 -I375 1.25166064229927 N360 -A365 0.451370360584909 Y367 -I375 0.39644279199957 I369 -I375 0.370134274731165 N350 -R361 0.345265046592018 F352 -A357 0.322711257954264 Y358 -P364 0.299569603379994 R356 -Y362 0.299502717605518 N350 -W355 0.293907269792028 K371 -R376 0.272104199888437 I369 -R376 0.237892340634957 D351 -H359 0.236011888775982 W355 -K366 0.211234144055271 D349 -R361 0.176590018985226 T354 -P364 0.173140952250353 A353 -R361 0.165609395919033 A357 -G373 0.163410951034138 T354 -W363 0.157578353785878 R361 -Y367 0.156314888049223 D351 -N360 0.145298754966822 Y367 -R376 0.128846135626321 W355 -A365 0.11863786940634 A357 -L368 0.11351800952168 D349 -K366 0.11317171874575 H359 -Y367 0.111074015243339 N350 -Y358 0.109597562903633 Y358 -R376 0.0987466518723714 D339 -V346 0.0977278243185662 N350 -R356 0.0969055721743324 H359 -K366 0.0908508442358622 A357 -Y367 0.089132668194245 A340 -P345 0.0885135068213527 A353 -Y358 0.085311133820219 L348 -T354 0.0814907540405354 T354 -A365 0.0800251375610808 L348 -P364 0.0738024174370701 I369 -N374 0.0716322350588889 L368 -N374 0.066999408763893 A347 -A365 0.0650664176807454 Y358 -N374 0.0592106180481879 Y358 -Y367 0.0554228648645667 L348 -A353 0.051098542450593 Y362 -Y367 0.0386116089466064 R356 -A365 0.0381709233456968 N350 -A357 0.0381181136714974 Y367 -N374 0.0338827175727712 A353 -A365 0.0314642566839378 D349 -N360 0.0287815943205644 W363 -L368 0.026481719607833 A347 -T354 0.0258498651267396 N350 -N360 0.0183437089151845 A340 -A347 0.0151793431096818 R356 -R361 0.0137920183149055 K366 -R376 0.0137696288048001 D349 -W355 0.0100366160355536 H359 -I375 0.00576219925898691 R356 -Y367 0.00472620726533934 A340 -V346 0.00397709216101805 I342 -A347 0.0032022830017948 T354 -I369 0.00130813509148853 A357 -N374 -0.00447655114200367 G341 -A347 -0.00498728129863846 F352 -R361 -0.0112696005950162 T354 -I375 -0.0114151155446818 K366 -I375 -0.0128303770169125 W355 -Y362 -0.0152643704097231 A357 -A365 -0.0171677176080154 D370 -I375 -0.0257676962342277 A357 -Y362 -0.0297186609098725 D349 -P364 -0.036355905858076 T354 -Y367 -0.037893968647029 W355 -Y367 -0.0388524318296655 A347 -Y367 -0.0422958526955295 N350 -Y362 -0.0426996871854075 I342 -L348 -0.0452685708931337 A357 -I369 -0.0469390063798265 D349 -A357 -0.0493676618935543 T354 -Y362 -0.0555283388995855 H359 -L368 -0.0562786331410878 Y367 -G373 -0.0569878668240114 T354 -K366 -0.0595051156555138 D349 -Y358 -0.0633238117124755 N350 -A365 -0.0646992955853316 L348 -N360 -0.0677202662776559 L348 -K366 -0.0701459465617855 F352 -N360 -0.0743249687637315 D349 -A365 -0.0775993179812664 D349 -R356 -0.0779462011698238 D339 -Y344 -0.0783916101838056 Y358 -G373 -0.078951241334976 D349 -H359 -0.0797045266800112 Y358 -L368 -0.0816906082245454 Y358 -A365 -0.0858182053925794 D349 -T354 -0.0875568594939495 D349 -W363 -0.0878435818293997 T354 -L368 -0.0899410968516272 R361 -K366 -0.0919006785957741 A353 -Y367 -0.0942471645216227 A357 -I375 -0.0946561810647031 T354 -H359 -0.100099364440736 Y358 -K366 -0.1006860221969 K366 -N374 -0.101085132889023 R356 -W363 -0.101129595775126 A353 -Y362 -0.10418279374358 N360 -K366 -0.105169972898501 D370 -R376 -0.106825609681693 N350 -H359 -0.108308747982554 Y358 -I369 -0.110947474262873 L368 -R376 -0.111797446041319 G341 -V346 -0.11224438182646 D351 -R361 -0.118169049878894 N360 -L368 -0.124433405348795 H359 -P364 -0.129445072753554 N360 -I375 -0.13383745817305 L348 -A365 -0.134851063567121 A365 -I375 -0.135373080505552 T354 -N360 -0.136847067739932 D351 -R356 -0.141670960684848 F352 -Y358 -0.142114123755075 H359 -A365 -0.144229608782881 Y358 -W363 -0.148136183007438 A347 -K366 -0.15055470635163 A357 -K366 -0.151894589942403 F352 -Y362 -0.160767248498133 A353 -N360 -0.162882156085101 W355 -P364 -0.170621056253401 W355 -W363 -0.179611253471032 D351 -Y362 -0.181313766506381 D351 -Y358 -0.185304528579977 L348 -W355 -0.188446884024328 D351 -A357 -0.191856465743773 A365 -R376 -0.192496549730485 L368 -G373 -0.196118462707663 T354 -R361 -0.19924599866202 L348 -W363 -0.199568378170939 N350 -W363 -0.215805351096968 A353 -H359 -0.233409769538257 Y358 -I375 -0.245724961807316 W355 -R361 -0.251955409489033 D349 -Y362 -0.258868104613513 D349 -Y367 -0.282272902978382 Y367 -D372 -0.292416263124975 F352 -H359 -0.304113537096826 N360 -Y367 -0.501142127641638