[Mon Aug 29 17:58:35 2016] >Input file: TMJ3J706M1G.pdb >TM segments: 323-334_ 383-394 MAIDEN score = -3.1645 Below is the ranking list of the residue pairs and their related pseudo-energy (the lower, the better). This includes inter-chain residue pairs. The maximum (least favorable) pairwise energy value has been set to 10. See the MAIDEN software article: Postic,G., Ghouzam,Y. and Gelly,J.C. (2015) Biochimie, 115, 155–161. ----------- ---------------- Calpha pair Empirical energy ----------- ---------------- C334 -I384 0.319975419739584 S333 -P392 0.216033886648761 F329 -D391 0.213183161461975 S332 -V388 0.19629294353801 F329 -Y386 0.189066913626437 W330 -P392 0.18171428586599 V324 -Y386 0.179436888598659 S331 -A389 0.178029000926311 L326 -P387 0.175716873890075 T325 -T385 0.173468540084325 S332 -A389 0.151908049788515 S332 -G383 0.148581050399566 S331 -E393 0.142632897246875 T325 -A389 0.134184633796524 L326 -I384 0.126529126225417 S332 -P392 0.0953203913706915 I384 -L390 0.0890231080080941 S332 -L390 0.0875343357835243 W330 -I384 0.0870821873638237 S333 -D391 0.0756473066723657 S331 -L394 0.059260262244347 S332 -T385 0.051276373250134 L326 -V388 0.049776839604621 D328 -S333 0.0488874208048728 S332 -D391 0.0439442462282604 S331 -G383 0.043933863550456 W330 -P387 0.0321605599544439 S331 -Y386 0.0291086170467141 T323 -Y386 0.0100856783619343 F329 -I384 0.00541130722093719 T385 -L390 0.000362790145435721 S332 -L394 -0.000806715402513081 S333 -G383 -0.00285356395805403 S331 -P387 -0.00393517707117752 V327 -V388 -0.00420453879402238 C334 -L390 -0.00533750415390122 S332 -P387 -0.0115271550694995 D328 -G383 -0.0129676373871686 S332 -I384 -0.0147263905388275 F329 -P387 -0.0217133186932692 V327 -I384 -0.0263819229937381 F329 -A389 -0.0289793894466563 S331 -D391 -0.0301909279209557 W330 -D391 -0.0331852492795792 F329 -E393 -0.0344148030391898 D328 -L390 -0.0398251090829668 T325 -Y386 -0.0399695428359649 T325 -V388 -0.0405799733270031 W330 -T385 -0.0418029104518663 D328 -I384 -0.0460884386638449 W330 -V388 -0.0471358138036866 V327 -D391 -0.0506331875626067 L326 -A389 -0.0571499107400664 S333 -I384 -0.0657087348111047 V324 -P387 -0.0671978047744994 S332 -Y386 -0.0691620349038453 W330 -Y386 -0.0722808577202745 F329 -L394 -0.0733605873681924 S331 -I384 -0.0748072860196736 W330 -E393 -0.0815039289890365 V327 -Y386 -0.0861235952226584 F329 -P392 -0.0863359118010165 T325 -P387 -0.0885315513052911 D328 -L394 -0.0900405687147042 D328 -Y386 -0.0914762231119015 I384 -A389 -0.0939777383261881 F329 -C334 -0.101693699238333 V388 -E393 -0.103361342567379 V388 -L394 -0.104857901516261 W330 -A389 -0.106672497534756 L326 -T385 -0.107973762613361 A389 -L394 -0.109791922376654 V327 -L394 -0.110861864366294 D328 -V388 -0.1137887125124 D328 -T385 -0.130340585290734 G383 -V388 -0.133752682366046 V327 -T385 -0.14297269926945 W330 -L394 -0.152345203795655 D328 -C334 -0.153637152718101 S331 -V388 -0.162273412058637 D328 -D391 -0.167385615849911 T323 -P387 -0.172772868805231 V327 -P387 -0.175097980527595 L326 -Y386 -0.179435339558948 S333 -L390 -0.185700109321814 V327 -A389 -0.193828387354422 W330 -L390 -0.195172533476397 F329 -V388 -0.198217375590714 S331 -P392 -0.222213324630482 W330 -G383 -0.22307648969267 V327 -L390 -0.23200408876812 D328 -A389 -0.233753763695376 F329 -L390 -0.268366070061155 S331 -L390 -0.303147976732633 D328 -P387 -0.380665085182627