[Fri Aug 26 18:05:32 2016] >Input file: TMJ3KQC6S1D.pdb >TM segments: B493-519_B523-530 MAIDEN score = -1.0783 Below is the ranking list of the residue pairs and their related pseudo-energy (the lower, the better). This includes inter-chain residue pairs. The maximum (least favorable) pairwise energy value has been set to 10. See the MAIDEN software article: Postic,G., Ghouzam,Y. and Gelly,J.C. (2015) Biochimie, 115, 155–161. ----------- ---------------- Calpha pair Empirical energy ----------- ---------------- V516B-L525B 0.870639496929094 S511B-T529B 0.742005985161784 L515B-V528B 0.687881631921153 L515B-L525B 0.678403070168434 G512B-S530B 0.615407205174393 P514B-L525B 0.603684374592952 Q519B-L525B 0.596578009011177 L515B-Y524B 0.577196178949809 P514B-V528B 0.502616481217178 C517B-Y524B 0.439575861879067 S511B-V528B 0.399272889217593 S506B-T529B 0.393261225775913 C517B-L525B 0.387393616250234 D510B-T529B 0.362597709429157 C507B-G512B 0.354151732658506 L515B-T529B 0.336880799310805 P514B-Q519B 0.334100647631739 C496B-R501B 0.320088700746239 M494B-V516B 0.315576928405625 V516B-W523B 0.309059790565589 A497B-D505B 0.300478615597368 C496B-V516B 0.295432116419978 P514B-W523B 0.291590101054583 D505B-V528B 0.281406326255646 M495B-G527B 0.273261363225233 P514B-A526B 0.260524240698826 R493B-A526B 0.256453082739442 V516B-G527B 0.239533709512084 G498B-R504B 0.23316756450299 E518B-Y524B 0.219917971310582 A497B-G502B 0.219162163481272 M495B-V516B 0.201442773738228 G498B-P514B 0.193853087787248 C496B-R504B 0.192156391945021 S506B-S511B 0.184303614929366 M494B-S511B 0.182255693784013 Q519B-G527B 0.182071067720541 M494B-L525B 0.179557836224727 G512B-Y524B 0.17459581632301 G513B-A526B 0.166747978577805 E518B-A526B 0.154706216904197 S511B-G527B 0.15115574124207 C496B-S506B 0.141724685850608 A497B-G512B 0.133694991445065 D505B-S511B 0.125192131416241 D505B-S530B 0.12460407881978 M495B-S511B 0.122677316206833 G512B-L525B 0.122138548320987 A497B-S530B 0.120502794141775 A497B-G513B 0.115978667372146 G498B-V528B 0.11385108417771 V516B-V528B 0.108246227931327 S511B-A526B 0.107211608436512 A497B-G503B 0.106644394020509 G498B-D505B 0.104572790136371 D499B-D505B 0.101974821511419 G498B-G527B 0.100070239198474 M495B-P514B 0.0972944449256119 G498B-G513B 0.0916173397665672 G498B-T529B 0.0912854303781468 C496B-S511B 0.0912432597673473 R493B-G527B 0.090634307176809 S506B-G527B 0.088949549305394 A497B-C517B 0.088524361773638 Y524B-T529B 0.0850134719755959 C496B-A526B 0.0843455647753504 M495B-D505B 0.0829802674653726 P514B-G527B 0.0752395918104991 R493B-S530B 0.0752137679359296 Q508B-P514B 0.0751977632283065 Q508B-V528B 0.0750967559179399 D505B-P514B 0.0695943826689756 E518B-G527B 0.0642512052927624 M495B-L500B 0.0622462075115742 M495B-S506B 0.0609494477674477 R493B-T529B 0.0605046566931021 G498B-V516B 0.0594529514645137 A497B-L525B 0.0556730048417897 C517B-V528B 0.0537878069905684 D499B-S506B 0.0450085519491059 D499B-R504B 0.0446286621734051 G512B-A526B 0.0436697817532714 G498B-S530B 0.0426726517551856 G513B-Q519B 0.0362436795841723 W523B-V528B 0.0316063027258648 C507B-L515B 0.0170322325047287 G498B-C507B 0.0163261777621806 D510B-V516B 0.0143139705098614 G498B-A526B 0.0139498521939418 M494B-P514B 0.0103687212765218 C496B-C517B 0.00692898179516988 M494B-G513B 0.00327518481939126 G503B-Q508B 0.00292907062954129 E518B-W523B 0.00217540721157272 A497B-C507B 0.00208607225277824 R493B-V528B -0.00149433125417886 M495B-L525B -0.0043243816323244 L515B-A526B -0.00611494269137247 M495B-A526B -0.00744214865962611 A497B-V516B -0.0112344531227961 R504B-T529B -0.0131491457031818 G502B-C507B -0.0165814414977645 Q508B-T529B -0.0180601554920964 Q519B-V528B -0.0184344597888599 S506B-V516B -0.0188097958882372 Q508B-G513B -0.0203610567453937 D505B-L515B -0.0205819067676369 G512B-G527B -0.0208511807934677 S506B-G512B -0.0218679551025573 G509B-P514B -0.0246613439679071 C496B-L515B -0.0292868396470354 Q508B-S530B -0.0321355639444433 A497B-E518B -0.0333195429254035 C496B-G513B -0.0358339131353969 C517B-T529B -0.0386094470857048 D510B-G527B -0.0390966048422876 L515B-G527B -0.0410298445225497 C496B-G502B -0.0448463944092703 C507B-G513B -0.0450144406309576 Q519B-A526B -0.0461719330109032 A497B-P514B -0.0467494583051657 G498B-C517B -0.0528971533788907 G509B-V528B -0.0537568417572221 G509B-S530B -0.0554075626437651 L525B-S530B -0.059644307707047 P514B-Y524B -0.0599814168635786 G513B-Y524B -0.0603030186922653 R501B-S506B -0.0636529629061122 M494B-L515B -0.0639511554876524 V516B-T529B -0.0640017356113276 D505B-G512B -0.0646022006784954 C507B-G527B -0.0665309535578036 S506B-P514B -0.0746278446294726 S506B-S530B -0.0773708836847771 A497B-D510B -0.0789267688799251 G513B-W523B -0.0791574732733045 D510B-S530B -0.0803339630298225 S511B-V516B -0.0809401282960627 C496B-L525B -0.0812000228235679 G498B-D510B -0.0863531252529963 D510B-L525B -0.0898969246953829 V516B-S530B -0.090241640444932 G498B-G503B -0.0905125618565359 D505B-G513B -0.0915676251104371 R493B-L515B -0.0919203697597624 G509B-L515B -0.0953418508640933 M494B-S530B -0.099516349998054 C517B-A526B -0.100891516839303 L500B-S506B -0.101193923181923 P514B-T529B -0.104391036089699 D499B-T529B -0.109567621299867 R504B-D510B -0.113609218069939 D510B-V528B -0.118452190677586 C496B-V528B -0.118612481262196 L515B-W523B -0.118948141941071 S506B-G513B -0.125142197478308 E518B-L525B -0.12628442548259 A497B-S511B -0.126972516590405 M495B-G512B -0.128756027697929 M494B-G512B -0.130017528566363 G498B-L515B -0.131375777125454 D505B-G527B -0.13499210492155 C496B-C507B -0.145827794200471 A497B-S506B -0.146671439605965 M495B-G513B -0.149982780375536 A497B-V528B -0.155336800529932 R504B-L515B -0.158051054508871 M494B-V528B -0.159598481174013 R493B-L525B -0.163590741542321 C507B-V528B -0.163755864893782 A497B-T529B -0.165181834184199 S511B-L525B -0.169509868952554 A497B-R504B -0.170509261822708 D505B-T529B -0.170864053844719 M495B-L515B -0.180576774006481 D499B-L515B -0.181012428930563 P514B-S530B -0.183846559178088 A497B-A526B -0.186709651839207 G509B-T529B -0.187921168012774 C507B-T529B -0.190422169341585 M495B-S530B -0.192910100512195 S506B-L515B -0.200512146573081 D505B-D510B -0.209783487453937 M495B-C517B -0.209871462885971 G498B-S506B -0.215635506506498 L515B-S530B -0.216873903618277 C507B-P514B -0.219005668705417 M494B-A526B -0.223510601506084 M495B-V528B -0.238635377626744 G513B-S530B -0.24103132412073 C517B-G527B -0.243240367046339 G513B-L525B -0.256790924263656 L500B-D505B -0.261666517039157 D505B-V516B -0.277963323102822 A497B-L515B -0.284100665327937 G513B-T529B -0.288441729148147 D510B-L515B -0.291842302646107 C496B-G527B -0.298939273832759 Q519B-Y524B -0.305950927024679 C496B-P514B -0.31073243812012 G512B-T529B -0.312549647828409 M494B-T529B -0.312929265218917 C517B-W523B -0.315345871732833 M494B-G527B -0.316503408934104 D499B-C507B -0.320023312908632 S506B-V528B -0.320210081838941 A497B-G527B -0.324711620070937 M495B-T529B -0.330454642311255 G513B-G527B -0.349837561804729 C496B-D505B -0.372860852520569 V516B-Y524B -0.376379031620651 S511B-S530B -0.405323045535834 C496B-S530B -0.467413350693616 V516B-A526B -0.470743870596801 C507B-S530B -0.479918449845663 G512B-V528B -0.502984016168186 C496B-T529B -0.547944225352663 G513B-V528B -0.55895223620921