[Fri Aug 26 16:40:35 2016] >Input file: TMK0XWZ8M5D.pdb >TM segments: 396-447_ 525-548 MAIDEN score = -3.6415 Below is the ranking list of the residue pairs and their related pseudo-energy (the lower, the better). This includes inter-chain residue pairs. The maximum (least favorable) pairwise energy value has been set to 10. See the MAIDEN software article: Postic,G., Ghouzam,Y. and Gelly,J.C. (2015) Biochimie, 115, 155–161. ----------- ---------------- Calpha pair Empirical energy ----------- ---------------- R399 -P404 7.50492017223416 I398 -S406 1.36487492414238 I398 -L405 1.11770956554945 F431 -V446 0.86850283931342 L400 -L405 0.854963895589917 E397 -L405 0.761792997220861 I531 -S536 0.721445756968905 R399 -L405 0.686962125682971 I531 -T537 0.683959730536278 R399 -S406 0.643253454638324 H533 -D540 0.616615692393383 R534 -I544 0.581450768946291 V529 -A541 0.569553055491364 L400 -Q415 0.483896071491808 F431 -S442 0.477100318111863 L405 -R414 0.475928288777256 I398 -P404 0.462767162691109 T430 -E444 0.428751099596256 T537 -I544 0.391814685744643 I538 -I544 0.386144611132994 F431 -E443 0.371378697217446 M419 -V435 0.315840247786731 L437 -S442 0.297576358192192 L427 -E443 0.294085610788073 S411 -V417 0.289137266840187 R534 -V539 0.287319433857479 V420 -V529 0.284156839396138 V530 -D540 0.27675600714591 D401 -V417 0.275616911898128 V435 -D440 0.259705839230028 A412 -A433 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