[Fri Aug 26 16:57:12 2016] >Input file: TMK7EQ34M1D.pdb >TM segments: 118-145_ 147-195 MAIDEN score = -17.3298 Below is the ranking list of the residue pairs and their related pseudo-energy (the lower, the better). This includes inter-chain residue pairs. The maximum (least favorable) pairwise energy value has been set to 10. See the MAIDEN software article: Postic,G., Ghouzam,Y. and Gelly,J.C. (2015) Biochimie, 115, 155–161. ----------- ---------------- Calpha pair Empirical energy ----------- ---------------- V170 -L179 1.16097521094969 A184 -N189 0.646254850503055 F142 -G148 0.617290365687164 S143 -G148 0.60777102781691 Y141 -G147 0.570127664643099 V169 -L179 0.553925134609173 R139 -S151 0.513868295600011 E172 -G178 0.479148939746423 F121 -T126 0.458066797197872 T174 -E180 0.445242046813566 N189 -K195 0.433295271785172 E180 -T187 0.427440910939346 E172 -P181 0.380916539285248 V170 -E180 0.366826436367912 R171 -L179 0.365466536768553 E173 -G182 0.343310971164133 G147 -C153 0.329959747710929 C123 -K132 0.329160838917938 A157 -A164 0.311129001014039 L166 -R171 0.300011403789682 V170 -G178 0.280519930169131 E172 -G182 0.277694090994671 L140 -G147 0.265812010573865 G182 -Q188 0.248232491132563 L140 -G148 0.245860727067272 R139 -E145 0.238058760009853 P181 -N189 0.234993392441521 Y141 -R150 0.228176973925125 Q168 -E180 0.22650618489676 L166 -G182 0.225884917251022 Q188 -K195 0.222812529137799 Q168 -G178 0.21608887756225 C123 -I131 0.214003775613753 R139 -C153 0.21176388954634 F160 -V167 0.211567444891022 G182 -N189 0.210107882075212 V170 -L183 0.208188939758466 E149 -T155 0.198581857673323 T138 -G147 0.19767774801789 A164 -R171 0.191889437678404 S151 -A157 0.182839246925183 A144 -E149 0.181746378471728 Q168 -E173 0.177094644321806 L177 -S185 0.175910002198017 Y141 -E149 0.174796208701412 T128 -T138 0.17367480829403 R171 -E180 0.172379109117828 L135 -G148 0.172136902626557 R139 -E149 0.16795812385401 E176 -P181 0.159359905322451 Q188 -L193 0.15413677217691 K132 -L140 0.152438352237936 K132 -R139 0.149315787838276 R171 -G178 0.142115443949005 C153 -F158 0.132177411932048 E149 -F156 0.130306212779397 G178 -S185 0.129582465660462 R139 -G147 0.128198785645935 S143 -V152 0.127965525432806 E180 -N189 0.125036471718789 V169 -L183 0.124923795253609 A157 -L162 0.123673460757182 R150 -A157 0.120696035875059 T174 -G182 0.115425676232715 V169 -G178 0.11413218351899 V170 -L177 0.113779717980175 V167 -G178 0.11364965470824 E180 -M186 0.110798193276823 R139 -A144 0.107596358863578 S185 -L190 0.107434587930094 V167 -L183 0.102683482913508 W122 -V127 0.102528120546471 Y141 -S151 0.100335331814958 M186 -P192 0.100169601515279 V169 -L177 0.0941090331679613 L175 -P181 0.0912669698494888 L179 -M186 0.0907292231010152 G148 -T155 0.0895863132903346 F156 -L166 0.0884512116840945 T138 -A144 0.0884334138051055 V169 -T174 0.0864475250907026 T138 -R150 0.0864229872011643 L140 -E145 0.0842644960810928 T174 -L179 0.0840298586698225 L159 -Q168 0.081753806358682 G178 -L183 0.0802798263089204 A157 -M165 0.0787686756355799 V169 -A184 0.0762683508860507 Q168 -L183 0.073742033335348 E176 -G182 0.071564752538118 M165 -E172 0.0714093065056975 L163 -Q168 0.0698172068909579 S185 -E191 0.0696214142773814 V170 -A184 0.0675102731253281 V120 -V127 0.0619386646177524 L177 -L183 0.0618598848563625 W122 -S130 0.0617459897085331 L135 -S151 0.0611600128905758 T136 -R150 0.0609120939391268 L163 -R171 0.0599741362925208 L175 -E180 0.0598745612766094 A119 -F129 0.0598691755545069 A184 -L193 0.0584844061698089 R171 -L177 0.0582444061910414 S130 -T138 0.0580083084663707 V137 -S151 0.0579936768455243 L124 -K132 0.0563239263881119 R171 -P181 0.0562149939490282 A119 -L125 0.0506929365433182 L162 -V170 0.0486645758458257 E173 -L183 0.0485224391849739 Q188 -L194 0.0481325000814801 F160 -Q168 0.0479127791228482 A144 -C153 0.047433876213713 L183 -L190 0.0469422252663527 L163 -V169 0.0456902976402027 E149 -L154 0.0441212733482272 V167 -G182 0.0428185852892646 G147 -L154 0.0419687851601029 M133 -F142 0.0409467283852685 R171 -G182 0.0403086932022649 L166 -E173 0.0397382236751369 E172 -L183 0.0396328969582789 M165 -L179 0.0371002562283484 Q168 -G182 0.0362222071267162 L140 -V152 0.0357245163792594 R150 -F156 0.0282125558972152 T136 -V152 0.027841372986127 L166 -G178 0.0277421703942835 L166 -E180 0.0271406134394732 F121 -S130 0.0266308462507325 T126 -F134 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