[Fri Aug 26 17:04:08 2016] >Input file: TML1M193M1D.pdb >TM segments: 315-321_ 325-341_ 343-359_ 361-369 MAIDEN score = 4.2463 Below is the ranking list of the residue pairs and their related pseudo-energy (the lower, the better). This includes inter-chain residue pairs. The maximum (least favorable) pairwise energy value has been set to 10. See the MAIDEN software article: Postic,G., Ghouzam,Y. and Gelly,J.C. (2015) Biochimie, 115, 155–161. ----------- ---------------- Calpha pair Empirical energy ----------- ---------------- P321 -E326 10 V336 -I341 1.50727303320271 V318 -A346 1.21809058097492 I316 -P344 1.05739932486147 H319 -N349 1.01798543402402 R327 -V332 0.895935890870523 V318 -I347 0.857069807652286 H319 -I347 0.623859694938067 I316 -V345 0.609669945095437 I316 -A346 0.608100934100149 H319 -D350 0.524758205575925 I316 -Y343 0.518238661431334 V318 -V345 0.506667740557753 G317 -Y343 0.488950837479401 R327 -I347 0.470371644047447 Q335 -Y343 0.462444073481959 V315 -Y343 0.43588440277806 N331 -K338 0.415334979139657 H319 -H365 0.414987328672161 V332 -R337 0.410726394350599 N359 -A364 0.386119482461974 D348 -W354 0.385877266134107 V315 -P344 0.372892171290256 V332 -Y343 0.35719431470489 V318 -W354 0.345006495315362 W354 -P363 0.342659935791799 V328 -D348 0.335806677385293 Y351 -Q356 0.32115525392897 A346 -A352 0.292742481183769 V332 -D348 0.286868478032981 P329 -I347 0.276834690471139 R334 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