[Fri Aug 26 17:04:51 2016] >Input file: TML1NFI7M1D.pdb >TM segments: 589-605_ 628-665 MAIDEN score = 2.7480 Below is the ranking list of the residue pairs and their related pseudo-energy (the lower, the better). This includes inter-chain residue pairs. The maximum (least favorable) pairwise energy value has been set to 10. See the MAIDEN software article: Postic,G., Ghouzam,Y. and Gelly,J.C. (2015) Biochimie, 115, 155–161. ----------- ---------------- Calpha pair Empirical energy ----------- ---------------- L651 -R660 1.80780507843564 V649 -S663 1.36678675315153 N653 -L658 0.942199722025604 V649 -Y664 0.830991973020101 L651 -S659 0.72245461703144 L651 -L658 0.684007784165142 D630 -L635 0.633023106930434 A642 -F647 0.585656904243488 D652 -L658 0.58403034743186 K592 -Y597 0.540851146455214 V649 -Y662 0.439270693917888 D652 -P657 0.402940755738871 D605 -A644 0.394497615386095 F647 -S663 0.369382954444751 V589 -Y664 0.356870967329029 L593 -V598 0.348965777430614 V649 -S661 0.347809115051872 Q654 -S659 0.335239694851408 S638 -A644 0.312872480059445 V649 -R660 0.305205298003647 L593 -L599 0.296794501061852 V589 -Y648 0.293086105568385 P646 -Y662 0.292579621548508 F647 -Y664 0.262883515696621 N653 -S661 0.261141738401631 L651 -Y662 0.25621234970222 T650 -P657 0.243959295814514 Y597 -D652 0.242884727186791 S594 -S601 0.229412166781347 T650 -S659 0.227738656929173 S633 -S638 0.225596191177501 G641 -S663 0.223800446379757 Y603 -V649 0.222264961551758 Q645 -D665 0.215853403101191 L651 -S661 0.214255299402794 G629 -Q636 0.205107963555466 Q654 -S661 0.200112388636042 L602 -N643 0.196248294681679 G641 -Y662 0.181622624668469 A642 -T650 0.178159047248834 V589 -D665 0.177199604417908 K592 -D652 0.174979453116146 D605 -A642 0.174936475850111 A644 -S663 0.173960322158651 Q636 -G641 0.169652309183015 D605 -P646 0.169496702917819 D596 -T650 0.167105017550185 V604 -V649 0.166675817152232 V604 -F640 0.165684461418357 K639 -R660 0.161820959012157 T650 -D665 0.161328963630106 S601 -V649 0.158421307911979 S638 -F647 0.157800193138826 S601 -Q645 0.15452608959744 L635 -G641 0.15421367672773 L599 -T650 0.151407667591458 A642 -R660 0.14924714547821 D652 -R660 0.148195041133377 K592 -T650 0.147836600595548 T650 -S663 0.146101188291113 Y603 -A642 0.145522729499661 A644 -D665 0.143067379864508 V604 -G641 0.142610047036326 N591 -D596 0.139948406985369 K639 -V649 0.129424759427957 K639 -A644 0.129294556899003 V649 -L658 0.129261226868591 D605 -N643 0.127893692381073 Y597 -Y662 0.127207856510819 S638 -Q645 0.120480115368078 S601 -S663 0.117963242796677 A642 -Y664 0.115548741541873 L602 -V649 0.115414410278525 Q654 -R660 0.114983533268917 A590 -D596 0.108336993204579 A642 -S661 0.106365708849915 L593 -V649 0.102784076289791 L599 -D652 0.101857083684093 D596 -L651 0.10178385319116 Y597 -S661 0.0980083842870894 I628 -Y634 0.0974657821227112 V604 -Q645 0.0927333318599102 A642 -Y662 0.091007681911055 D605 -K639 0.090422388263499 K595 -D652 0.0899704604633041 F640 -S661 0.0853415609888124 S601 -A644 0.0852491010130132 Y597 -N653 0.0844881320959914 Y648 -S663 0.0843431264528607 Y648 -S659 0.0833553258330735 S594 -T650 0.0830231732038459 V589 -Y597 0.0817225021441654 Y648 -D665 0.0785263536294067 D630 -S638 0.0756473066723657 S594 -D652 0.0756473066723657 A644 -V649 0.0753164617464765 D605 -F640 0.0732835947880903 V589 -V598 0.0726030057483298 F640 -Y648 0.0717566329370696 K639 -Y648 0.064066511867396 S601 -D665 0.0629880112377221 I628 -L635 0.0619982872375735 V598 -N653 0.0618959832100472 F640 -P646 0.0593600738526581 L602 -P646 0.0561434404827992 A590 -K595 0.0530272727157257 S601 -Y664 0.0521780340923055 L602 -A642 0.0513838802339199 F647 -R660 0.0481091463996051 D630 -R637 0.0471235004053416 I600 -A642 0.045317746633418 D652 -S663 0.0452298039316244 N643 -Y662 0.0449567666015114 D605 -S638 0.0430708672513131 P646 -S663 0.042559548146949 K595 -T650 0.0412963571163531 F640 -Q645 0.0411965573576132 Q636 -N643 0.0389829985095633 Y603 -N643 0.0366757085328251 L593 -L651 0.0360437595480096 V604 -A644 0.032731584904047 N643 -V649 0.0321410804135349 A590 -V598 0.0318904910689599 L602 -F640 0.0311488393052524 W632 -R637 0.0259691242033466 F647 -S661 0.0256746772418537 L599 -L658 0.0254256597292679 V604 -K639 0.0245537211840327 N643 -D665 0.0244409581623626 Y597 -T650 0.024134835457932 G641 -L651 0.024107752284328 D596 -N653 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