[Fri Aug 26 17:16:33 2016] >Input file: TML8FLS6M1D.pdb >TM segments: 261-279_ 293-315 MAIDEN score = -8.9548 Below is the ranking list of the residue pairs and their related pseudo-energy (the lower, the better). This includes inter-chain residue pairs. The maximum (least favorable) pairwise energy value has been set to 10. See the MAIDEN software article: Postic,G., Ghouzam,Y. and Gelly,J.C. (2015) Biochimie, 115, 155–161. ----------- ---------------- Calpha pair Empirical energy ----------- ---------------- S265 -G306 0.648590293574824 I303 -R309 0.379565760590102 I268 -I303 0.364127706816966 L264 -R309 0.358071583797152 W263 -N305 0.30332030519721 G271 -S278 0.2980766724244 S269 -G276 0.291299802030546 L264 -G306 0.256969261412113 W263 -G308 0.253527852613473 L274 -G299 0.247103105738761 L264 -N305 0.232419646545625 M262 -R309 0.231870689743931 S273 -S302 0.226861609718068 S269 -G306 0.208597640035565 L264 -S302 0.19203548447375 M262 -N305 0.191706377733207 G267 -S302 0.185411290505921 L261 -G306 0.179392578552331 L261 -G313 0.178747074442436 N305 -G313 0.177472451755963 L266 -V272 0.17118653068635 L274 -S296 0.166323054421581 W263 -T307 0.161326275303044 W263 -T312 0.153465886622017 G271 -G306 0.151124272941292 V272 -S277 0.14759228683946 G299 -I304 0.147165506134133 W263 -L301 0.146875305107121 G267 -G276 0.144447677267038 L264 -T307 0.143848974508307 G267 -G308 0.137296761251586 W263 -G310 0.125931359417037 S265 -V300 0.124221398280377 G267 -G299 0.123673240468733 S278 -S296 0.11776934537185 T307 -T312 0.116513211585819 A294 -S302 0.112945998792382 L274 -A298 0.111961712823148 W263 -G306 0.110606656988306 G299 -G306 0.110545008047385 I268 -G276 0.110470944472329 S265 -G308 0.107622802960456 G271 -A298 0.106726994006801 A295 -L301 0.102358454987852 S269 -S277 0.0964426892006554 S273 -Y279 0.0955835424529301 W263 -S269 0.094941560483027 L264 -V272 0.0917930444793122 G267 -G310 0.0888228341290875 L266 -I304 0.0869756284129508 I304 -T312 0.0850059394531879 S277 -S296 0.0845073555922617 S269 -L274 0.0825606361497186 L266 -R309 0.082419030842652 S265 -T312 0.0806688666353121 G267 -R309 0.0788491578272008 A294 -I303 0.0745575025465572 I268 -S273 0.074000638225252 W263 -I304 0.0722363538963769 I268 -G310 0.0715130957753694 A270 -G299 0.0682403565033258 G299 -N305 0.067368788320683 S269 -S278 0.0670160404565783 S302 -G310 0.0655231617327594 G267 -N305 0.0637887577529301 G271 -V300 0.0624961035908633 M262 -G308 0.0623966541335426 S273 -S278 0.0622172051126895 W263 -G313 0.0619462303141036 L264 -G308 0.0605753749510894 L264 -G271 0.059273959874094 S297 -I304 0.0588703410547118 G271 -L301 0.0578003692042116 L264 -L301 0.0576256952533449 I304 -G310 0.055500161415047 G271 -S296 0.0524958629859265 A298 -N305 0.0515226165892557 G267 -T307 0.0506371524976128 L261 -G267 0.0501859882385052 I293 -L301 0.0499719975969164 S273 -G299 0.049963377747742 S302 -R309 0.049860279066636 G267 -I303 0.0464059548984945 L266 -G310 0.0459892984251848 L264 -A311 0.04539152349638 L266 -L274 0.0432366490120639 V272 -Y279 0.0406649361595104 S302 -A311 0.0393027489917106 V272 -S302 0.038023521425306 V272 -G306 0.0373169693897233 S269 -G299 0.0372103049261369 A270 -L301 0.0368042692064288 M262 -S269 0.0364236348295315 S296 -S302 0.0362367295120558 L301 -G310 0.0361212593166342 W263 -I303 0.0359578521957846 A270 -S277 0.0353969634416971 S265 -L301 0.0319448673462809 S265 -G313 0.031656708247076 A270 -G306 0.0309571227428367 I268 -S302 0.0286224928035734 M262 -A270 0.0269717948011373 A298 -T307 0.0263273747229986 L261 -R309 0.0245932302094123 V272 -V300 0.0235644554001273 R309 -W314 0.0161724921056911 L261 -T312 0.0155928745284633 S269 -F275 0.0153812573603573 W263 -R309 0.0152528812149557 G267 -I304 0.0140227394044272 W263 -G271 0.0135419511995281 L274 -I303 0.0133802330819002 L266 -T307 0.0127968748197165 G267 -L301 0.0118681921213799 S269 -I303 0.0117896763668783 L266 -V300 0.0106855763192435 S265 -I304 0.0083133660817154 L266 -L301 0.00787225786208268 S265 -S273 0.00588568945321688 L264 -G313 0.00564400182329017 I268 -A298 0.00548522521828687 M262 -I268 0.000616941797976889 L261 -S269 -0.000891164330253363 L264 -G299 -0.00267051586940192 I304 -R309 -0.00303606013789093 S297 -N305 -0.00494692754987813 I268 -R309 -0.00535103560179306 L274 -S297 -0.00628636429919549 W263 -A270 -0.0106634424834742 M262 -S302 -0.0107127472083475 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I268 -G308 -0.118381416734642 G271 -I304 -0.119790434942303 V300 -G308 -0.119849677633836 V272 -I303 -0.122066567176029 R309 -V315 -0.12226642891379 G267 -G306 -0.123896406026021 A294 -G299 -0.125227065170095 A270 -S278 -0.125800588831927 L301 -G308 -0.126435697798129 A295 -S302 -0.127461976786905 L264 -G310 -0.128116862692469 G271 -S302 -0.128931705308718 G267 -V300 -0.131061121432104 G267 -S273 -0.133364859809272 S269 -S302 -0.137671028800928 G310 -V315 -0.138935361925966 M262 -T312 -0.140243664636688 S265 -G310 -0.147418609015876 I268 -T307 -0.149673368017551 S302 -G308 -0.150134624489146 G271 -S277 -0.150156339660177 S269 -L301 -0.156501728244423 N305 -A311 -0.1573636176402 S265 -I303 -0.162617376795668 I293 -G299 -0.163071108576641 L264 -A270 -0.163452361827019 N305 -G310 -0.167049988488805 L301 -T307 -0.170166743522117 G306 -G313 -0.17101070520808 L261 -N305 -0.171207054038924 T307 -G313 -0.171483069815849 S297 -I303 -0.172626325828129 G308 -G313 -0.176715232656768 A270 -S302 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