[Fri Aug 26 17:17:32 2016] >Input file: TML8HYN8M1D.pdb >TM segments: 362-370_ 375-382 MAIDEN score = 7.5591 Below is the ranking list of the residue pairs and their related pseudo-energy (the lower, the better). This includes inter-chain residue pairs. The maximum (least favorable) pairwise energy value has been set to 10. See the MAIDEN software article: Postic,G., Ghouzam,Y. and Gelly,J.C. (2015) Biochimie, 115, 155–161. ----------- ---------------- Calpha pair Empirical energy ----------- ---------------- P370 -G375 6.13907276851427 C363 -C382 1.41021518368692 F365 -C382 1.04617074730091 A364 -E380 0.773257808872536 F365 -W377 0.549393151581662 C363 -E380 0.515428308070353 C363 -S379 0.491471040997054 W366 -S378 0.483834398853703 Q362 -Y368 0.458582331605491 F365 -E380 0.389359432226724 F365 -S379 0.371094800956343 W366 -G375 0.353388281558557 F365 -S378 0.285016612101354 L369 -G375 0.261978527006607 P370 -E380 0.247136995518593 L369 -G381 0.177632227771922 W366 -G381 0.159064036819304 C363 -Y368 0.148647006269409 Q362 -E380 0.123173506708908 Y368 -S379 0.117954658857896 Q362 -S376 0.113834265235385 C363 -S376 0.101395072564761 S376 -C382 0.0971039226813761 A364 -G375 0.0702351565337551 A364 -S379 0.0682440864297558 C363 -S378 0.0680187942450656 A364 -L369 0.0662837877859804 Q362 -C382 0.065175749365519 A364 -C382 0.0651600061061846 N367 -C382 0.063074541575574 Y368 -S376 0.0575530450844042 A364 -W377 0.0242545781971879 P370 -G381 0.013261334635132 G375 -E380 0.00929389821046289 A364 -P370 0.000224113763480638 Y368 -G375 -0.0010266886669239 A364 -S376 -0.00147524081668193 S376 -G381 -0.018075025676495 N367 -G381 -0.0183232619770703 Q362 -N367 -0.0268527858349985 W366 -S376 -0.0363148875719714 N367 -E380 -0.040282100604367 W366 -S379 -0.0455473448202304 N367 -S378 -0.048929078582741 L369 -E380 -0.0510285240329447 Y368 -S378 -0.0518229672431065 N367 -W377 -0.0536635381535664 Q362 -W377 -0.0590231239407493 W366 -E380 -0.0652503851271335 Q362 -S378 -0.0732141129444421 F365 -P370 -0.0771984349602888 Y368 -G381 -0.0779914659397889 L369 -S379 -0.101268175155525 P370 -S379 -0.106377185701577 Y368 -E380 -0.117710302177565 Q362 -S379 -0.120968312098491 F365 -G375 -0.128224296298349 Y368 -W377 -0.133644678142459 W366 -C382 -0.135476246579963 W377 -C382 -0.137085328285408 F365 -G381 -0.191686734140307 L369 -S378 -0.220224960662361 N367 -S379 -0.225910034479952 F365 -S376 -0.241261711652911 C363 -G381 -0.244685441716601 Q362 -G381 -0.255224100840136 L369 -W377 -0.280713524827677 L369 -S376 -0.288418251996893 Y368 -C382 -0.308992425817468 N367 -G375 -0.337966533034262 P370 -S378 -0.338527672193464 P370 -W377 -0.357691466176832 C363 -W377 -0.388098472292194 A364 -S378 -0.402987634387863 A364 -G381 -0.407828952415161 W366 -W377 -0.48538530484985 P370 -S376 -0.525432901328044 N367 -S376 -0.59809396944702