[Fri Aug 26 17:21:24 2016] >Input file: TML8NTZ9M3D.pdb >TM segments: 398-422_ 551-571 MAIDEN score = -5.6074 Below is the ranking list of the residue pairs and their related pseudo-energy (the lower, the better). This includes inter-chain residue pairs. The maximum (least favorable) pairwise energy value has been set to 10. See the MAIDEN software article: Postic,G., Ghouzam,Y. and Gelly,J.C. (2015) Biochimie, 115, 155–161. ----------- ---------------- Calpha pair Empirical energy ----------- ---------------- K402 -A555 0.862511184363179 L409 -I420 0.833091475424879 K407 -Y412 0.747988659632196 K402 -I554 0.676093652541711 K402 -L570 0.661260619031916 H556 -D571 0.621713787598426 L408 -P415 0.578085353356844 V406 -R411 0.472203273048321 L408 -F413 0.423244808302037 Y412 -Q419 0.412340806726307 T560 -I567 0.410946597882202 K402 -H556 0.393593273631079 A555 -T560 0.345588074091637 G399 -A555 0.317896635452704 L409 -E414 0.28994062330215 K407 -S416 0.285138942279249 K407 -P415 0.276732595451429 G401 -L570 0.264620562212073 A555 -R562 0.258939142613993 S400 -K407 0.234264675744639 S559 -Q566 0.2251279740789 F410 -Q419 0.224262314641055 L558 -E563 0.206734794945347 G401 -D571 0.202225504905752 S400 -V406 0.191513793389481 L408 -I420 0.185759737004221 L405 -S416 0.17926238426636 R557 -A564 0.167930833352979 T404 -I420 0.166887387026517 S398 -V569 0.165223655456262 G401 -A555 0.160570384043821 I422 -T551 0.15855003145514 T404 -A555 0.157294909019644 H556 -I567 0.152114140586609 R557 -V569 0.147825844490019 I554 -V568 0.144952727492873 I553 -L570 0.141906301702994 R411 -Q417 0.141632525222741 L405 -G418 0.141539468695806 S398 -S559 0.139432371667509 G399 -R557 0.13602007699908 S559 -V569 0.134623837104426 T551 -E563 0.132469923410713 V406 -Y412 0.130558266300202 S398 -T404 0.129421721623354 R411 -G418 0.128857124478803 R557 -Q566 0.127410028919405 L558 -L570 0.126995847932242 S559 -V568 0.126940706442165 S559 -D565 0.125849065052917 K402 -T560 0.123701036309959 L408 -I554 0.122568704320947 K402 -F410 0.121466294486474 S403 -R411 0.119566828498713 V406 -E414 0.119200183108547 T404 -P415 0.11893135152908 I553 -S559 0.118313230430533 K407 -I554 0.114734923234672 S400 -V569 0.112190607926624 G399 -D571 0.111852427526164 R411 -I420 0.111380353811436 G401 -V568 0.109936967040322 T404 -S416 0.109360657361204 H556 -V561 0.105217184320014 F413 -Q419 0.105096127201579 L409 -L570 0.102576923652326 S400 -L405 0.101807837572355 S400 -V568 0.100474335274076 T404 -V569 0.100052620247085 R557 -R562 0.0952378237516919 L405 -L421 0.0946221731259547 I552 -A564 0.093845217812591 S400 -R557 0.0928543654123093 I553 -I567 0.0919968923282193 L405 -I422 0.0917300829887742 V406 -T551 0.0908531544792335 S403 -I554 0.0901453534025913 R411 -S416 0.0900881312239434 V406 -I422 0.0900353898077909 T551 -D565 0.0898050380165172 L409 -G418 0.085453996383912 G401 -F413 0.0852075516882027 L405 -V568 0.0797160223347189 R557 -V568 0.076347013167797 V406 -L421 0.0758065920849214 H556 -V569 0.0732200534866196 S403 -D571 0.0729180912985139 S398 -T560 0.0728292749847168 T404 -D571 0.0727773178678959 Y412 -G418 0.0696774955849797 A564 -L570 0.0683602096131395 T560 -L570 0.0657523656491282 R557 -D571 0.064826665066315 F410 -I552 0.0645292457391986 L408 -I553 0.0632854142687527 E414 -L421 0.0597434496992961 G401 -P415 0.059063889380615 L405 -F413 0.0587743379404859 G401 -I554 0.0576800524658143 I552 -D565 0.0565362598425567 I552 -V569 0.0562745993508909 T404 -I553 0.0526982980726401 S403 -V569 0.0524920443968919 R557 -E563 0.0518157780710999 V406 -G418 0.0505668376058039 H556 -A564 0.0501322218222919 V406 -A555 0.0498084429311882 K407 -E414 0.0494366606050463 S398 -L558 0.0488515627358721 G399 -V406 0.0462070290393601 I554 -R562 0.0439149754893466 R411 -Q419 0.0419464628959632 L405 -I552 0.0407771866006703 I552 -T560 0.0405649079215546 T404 -Q417 0.040243255109514 V406 -H556 0.0391006190370566 S403 -E414 0.0384022222205758 T404 -Q419 0.0374059109804624 T560 -V568 0.037240677100967 G401 -L409 0.0369627237614019 K402 -F413 0.0340431169595949 V406 -I420 0.0330050943007274 I553 -V569 0.032346552109809 L405 -Q419 0.0311853399578199 S398 -L405 0.0307918476910936 K402 -R557 0.0288589521350628 I553 -Q566 0.0265939363304586 P415 -I422 0.0251603962691256 H556 -V568 0.0240864555489511 T404 -G418 0.022123202735955 V406 -Q419 0.0219928938082079 T404 -I554 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