[Fri Aug 26 17:25:14 2016] >Input file: TML8P220M5D.pdb >TM segments: 57-70_ 105-119_ 299-321_ 325-337 MAIDEN score = -6.8175 Below is the ranking list of the residue pairs and their related pseudo-energy (the lower, the better). This includes inter-chain residue pairs. The maximum (least favorable) pairwise energy value has been set to 10. See the MAIDEN software article: Postic,G., Ghouzam,Y. and Gelly,J.C. (2015) Biochimie, 115, 155–161. ----------- ---------------- Calpha pair Empirical energy ----------- ---------------- L105 -I110 1.21831815924244 L105 -I111 1.00640738713765 D317 -L326 0.847157737056498 L108 -T113 0.815163279732245 I316 -L326 0.809937112552266 K313 -L326 0.727335929536119 I321 -L326 0.559498710977673 I306 -S332 0.557125707961804 E320 -C327 0.443911316724692 F305 -L335 0.436778847880094 F311 -I316 0.40837239324808 S106 -I111 0.402086775214535 T308 -S332 0.398901345239091 P309 -N314 0.388012477575142 I316 -I321 0.376014812174177 T308 -E315 0.366469426445134 F302 -G336 0.363251069614805 I111 -L116 0.360284610077404 F311 -C327 0.356087762261409 I110 -G115 0.319375152227898 S68 -I110 0.317391353525185 M310 -I316 0.315183297210831 S58 -A118 0.308349466602011 S62 -A118 0.300797116611603 P309 -S332 0.288515619098612 F305 -G336 0.281183591644015 E315 -C327 0.278464655140276 I312 -D317 0.262916633097367 M304 -N333 0.259508198015115 S106 -G115 0.250469542641828 F305 -S332 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