[Fri Aug 26 17:25:30 2016] >Input file: TML8P220M6D.pdb >TM segments: 383-393_ 398-407 MAIDEN score = 5.3440 Below is the ranking list of the residue pairs and their related pseudo-energy (the lower, the better). This includes inter-chain residue pairs. The maximum (least favorable) pairwise energy value has been set to 10. See the MAIDEN software article: Postic,G., Ghouzam,Y. and Gelly,J.C. (2015) Biochimie, 115, 155–161. ----------- ---------------- Calpha pair Empirical energy ----------- ---------------- L390 -V400 1.0443245721408 L388 -L403 1.01552045295511 F385 -S404 0.871356389230343 T389 -L403 0.826183823434699 L390 -I399 0.820617217184395 I383 -V407 0.695400854120571 F385 -V405 0.685182380846522 E386 -S404 0.583771207852708 L388 -N402 0.521422009120315 A384 -V407 0.495396091282958 A384 -S404 0.406249006961243 F385 -L403 0.394334892050316 F385 -S406 0.369000403324406 L388 -S404 0.338933154869201 I383 -S406 0.301670154392875 L388 -V400 0.297380323651141 I383 -V405 0.290824641643066 T392 -E401 0.281528861781665 L390 -V398 0.267820056049491 T392 -I399 0.2443149903999 L388 -V405 0.201128230953395 E386 -V405 0.157249241854821 N387 -S406 0.142564584845169 T389 -V400 0.129288552896439 A384 -N402 0.124875130088263 T389 -N402 0.123221174464613 A384 -S406 0.11582855476186 L390 -S404 0.104847559830977 T389 -I399 0.0865719357460257 E386 -N402 0.0688524444192868 Q391 -I399 0.0675060754328918 Q391 -V400 0.0649567403399489 Q391 -S404 0.0487021720219341 L390 -N402 0.0448330301175446 A384 -T389 0.0408541434530627 F385 -E401 0.0386314356132036 A384 -V405 0.0346714172638976 L388 -S406 0.0320210426582926 E386 -V407 0.0277021431186062 T389 -V405 0.0246221650567655 E386 -V400 0.0174034118333812 P393 -V400 0.0115232280921681 T392 -L403 0.00462334485170257 L390 -V405 -0.0125811601799093 N387 -L403 -0.020653233784107 I399 -S404 -0.0411368689178033 I383 -L403 -0.04418825638116 N387 -S404 -0.0519106638902236 N387 -E401 -0.064675662111199 F385 -N402 -0.0691204842411492 Q391 -N402 -0.0713824355485262 L388 -I399 -0.0738337040887265 V398 -L403 -0.0835192509497693 I383 -L388 -0.0854543297464678 N387 -V398 -0.0889482180872951 P393 -V398 -0.102430873317076 N387 -I399 -0.105635821752788 V400 -V405 -0.106099833658149 F385 -V400 -0.108482408215664 T392 -V400 -0.137840465681499 E386 -S406 -0.142280782111627 F385 -L390 -0.144113396893902 T392 -V398 -0.152859926856456 F385 -V407 -0.153055370901756 N387 -V405 -0.163810077915521 Q391 -L403 -0.1647775918445 L388 -E401 -0.171106902501594 L390 -E401 -0.186086321456993 T389 -V398 -0.190848649914354 E386 -L403 -0.196349578707416 P393 -I399 -0.205407787530858 A384 -L403 -0.209095653284966 E386 -E401 -0.212362712292962 L388 -V398 -0.227885312978458 Q391 -V398 -0.252479550768093 T389 -E401 -0.2814876739316 Q391 -E401 -0.287616418210147 T389 -S404 -0.287901942016724 I383 -S404 -0.290003235193721 N387 -V400 -0.2966786889247 P393 -E401 -0.343272581924727 L390 -L403 -0.40969721595286 N387 -N402 -0.882651748774251