[Fri Aug 26 17:29:25 2016] >Input file: TML8Y892M1D.pdb >TM segments: 242-266 MAIDEN score = -3.4962 Below is the ranking list of the residue pairs and their related pseudo-energy (the lower, the better). This includes inter-chain residue pairs. The maximum (least favorable) pairwise energy value has been set to 10. See the MAIDEN software article: Postic,G., Ghouzam,Y. and Gelly,J.C. (2015) Biochimie, 115, 155–161. ----------- ---------------- Calpha pair Empirical energy ----------- ---------------- A259 -D264 0.400836606658063 R245 -L250 0.396792623698616 A249 -A254 0.377111009057083 R261 -V266 0.374173577811678 L250 -G255 0.301127272614878 T258 -P265 0.275483553576234 L243 -K248 0.221371170667401 Y257 -R262 0.191859546413483 D246 -R256 0.176648943685746 Y257 -P265 0.17033079682312 V247 -R256 0.16310489252414 V247 -A259 0.131258685590895 A254 -R262 0.118150714901337 D246 -H253 0.104783548468465 R256 -R262 0.0954545572277418 R245 -T251 0.0927136044002254 L243 -L250 0.088252310465367 L243 -L252 0.072154857306364 A259 -P265 0.0565984800378203 T251 -A259 0.0544386748719585 G255 -R261 0.0496339320145172 A259 -V266 0.0494355538445399 R256 -R261 0.048004834746219 K248 -T258 0.0411830506117119 R256 -D264 0.0347979810312888 L252 -S260 0.0343048249062663 L250 -A259 0.032525509858048 V247 -Y257 0.0257338239689613 V247 -T258 0.0108171704162903 G255 -L263 0.00124834156009079 V247 -H253 0.00120421544258242 H253 -A259 0.000448249844563264 H253 -R262 -0.00102695533162755 S260 -P265 -0.00104577639048209 D246 -G255 -0.00143081639662535 H253 -S260 -0.00178533665948244 H253 -T258 -0.00508366161395557 V247 -A254 -0.00679705942915643 L243 -T251 -0.0087763540101693 K248 -R256 -0.0151869927422323 M242 -K248 -0.023629955586534 T258 -V266 -0.0333187162733672 L244 -G255 -0.0354258771064507 D246 -L252 -0.0365086155958529 T251 -S260 -0.0414769088152762 Y257 -V266 -0.0417752874215234 T251 -T258 -0.0451192118440731 D246 -A254 -0.0463112743948964 A249 -G255 -0.0741808574152811 A249 -R256 -0.0767409707501638 L250 -Y257 -0.0781892514825731 L244 -T251 -0.080677775331353 L244 -L252 -0.0901774573652752 T258 -D264 -0.0962151534876896 L243 -G255 -0.103168133014423 G255 -D264 -0.105634765434525 L250 -T258 -0.10869450089009 M242 -L250 -0.109535601276892 R245 -G255 -0.110071456444734 L252 -Y257 -0.110875812597334 R245 -L252 -0.117630161524263 V247 -L252 -0.121012385174854 L252 -R261 -0.121807661850831 T251 -Y257 -0.133403953355206 H253 -R261 -0.135953651415084 K248 -G255 -0.14117102167471 K248 -A254 -0.14321516310195 L244 -A249 -0.155555321671388 K248 -A259 -0.156794530701837 A254 -L263 -0.164009520633838 M242 -V247 -0.178230680633378 Y257 -D264 -0.179079901926641 L243 -A249 -0.186193364812023 L244 -L250 -0.187781078889496 A254 -R261 -0.188005193356832 G255 -R262 -0.18889987539582 Y257 -L263 -0.192009552738646 R256 -L263 -0.194668342993358 G255 -S260 -0.195601648682051 L250 -R256 -0.201839658832701 T251 -R256 -0.20417885932293 A254 -S260 -0.214585662381122 V247 -G255 -0.218333527004638 D246 -T251 -0.226454011879949 K248 -H253 -0.237448937692925 M242 -A249 -0.241660453427796 L252 -T258 -0.262301903562353 L252 -A259 -0.275187996686792 S260 -V266 -0.305238848528424 T258 -L263 -0.314080878690071 A254 -A259 -0.417005731559039