[Mon Aug 29 17:32:28 2016] >Input file: TML8Y892M2G.pdb >TM segments: 29-45 MAIDEN score = -3.5415 Below is the ranking list of the residue pairs and their related pseudo-energy (the lower, the better). This includes inter-chain residue pairs. The maximum (least favorable) pairwise energy value has been set to 10. See the MAIDEN software article: Postic,G., Ghouzam,Y. and Gelly,J.C. (2015) Biochimie, 115, 155–161. ----------- ---------------- Calpha pair Empirical energy ----------- ---------------- R35 -A42 0.256542867891917 S30 -P38 0.253927410635863 A32 -S39 0.232223696001371 S30 -S39 0.225838597348851 H31 -R36 0.210520396897923 H31 -P38 0.206652764358492 R36 -A43 0.182035876386276 C33 -P38 0.147150913462278 P38 -T44 0.124805019543022 H29 -G37 0.113251060192401 C34 -A41 0.0903557336101558 G37 -T44 0.0895672421577424 C34 -A42 0.0832385197345437 A32 -S40 0.0742183045264331 H31 -S39 0.0672048463804088 G37 -L45 0.00299218026232095 S30 -R35 0.000392636347514852 R36 -A41 -0.00787146177783216 H29 -R35 -0.0159317283591651 R36 -T44 -0.0233381799254244 C33 -A42 -0.0241696590355829 A32 -A41 -0.0277008294166983 C33 -A41 -0.0385723805204087 H31 -S40 -0.0792665641762307 S40 -L45 -0.081433724009802 S30 -R36 -0.0871090005273207 R35 -S40 -0.0947419631018585 G37 -A43 -0.100844903127534 H29 -C34 -0.115133723889433 R36 -L45 -0.146046236638311 S30 -G37 -0.150212605938013 H29 -R36 -0.152626970173368 R36 -A42 -0.170525918089845 A32 -P38 -0.176867284521557 R35 -A43 -0.180545101139051 R35 -A41 -0.187563663350935 P38 -A43 -0.214103859345796 S39 -T44 -0.236328670243898 C34 -S40 -0.240459732708444 H31 -G37 -0.252069781970528 S39 -L45 -0.290237052726901 H29 -P38 -0.297892038187946 C33 -S40 -0.323384928526182 G37 -A42 -0.344212699606711 C34 -S39 -0.370345309689256 A32 -G37 -0.438744919187622 P38 -L45 -0.481562075098649 C33 -S39 -0.55258067369105