[Fri Aug 26 17:36:55 2016] >Input file: TMM0QZX2M1D.pdb >TM segments: 338-366 MAIDEN score = -1.2048 Below is the ranking list of the residue pairs and their related pseudo-energy (the lower, the better). This includes inter-chain residue pairs. The maximum (least favorable) pairwise energy value has been set to 10. See the MAIDEN software article: Postic,G., Ghouzam,Y. and Gelly,J.C. (2015) Biochimie, 115, 155–161. ----------- ---------------- Calpha pair Empirical energy ----------- ---------------- V348 -W353 0.797341459285891 L346 -V352 0.553950300306585 G345 -Y351 0.530640090502114 F354 -L359 0.431097898331968 V348 -Y356 0.337959182641112 Q347 -Y356 0.328750573420557 Q347 -C355 0.222077189122673 G342 -C355 0.188841029648581 Y351 -Y356 0.170726313404922 G345 -A357 0.162396609149774 G345 -F354 0.162199136821048 L346 -W353 0.155193261274044 G340 -G345 0.154407610224501 C355 -S361 0.139820152154052 Y341 -L346 0.132692018874631 Q347 -S361 0.113224514573324 Y341 -Y351 0.112322392671858 L346 -Y356 0.100264211404558 L346 -V358 0.0942813997265248 V358 -H364 0.0931716986805395 V352 -V360 0.0923681419693398 V348 -S361 0.0889869449923446 V352 -V358 0.0862411214122432 A349 -L359 0.06614655319628 L346 -V360 0.0644470024912369 W353 -L359 0.0637638107924596 W353 -S361 0.0626307217556715 G345 -L359 0.0606438072351629 G342 -V348 0.0519102714230797 A350 -L359 0.0482196009017493 G345 -V352 0.0433737320746141 G342 -A349 0.0364911093070752 G345 -V358 0.0362384531342612 L343 -A349 0.0327358961483331 I344 -W353 0.032724471103232 A357 -H364 0.028573274066229 L343 -W353 0.0279665852823797 G340 -L346 0.0151645079443279 Q347 -V360 0.00918803372702826 L343 -C355 0.0084739807372578 I344 -C355 0.00837104897746865 W353 -H364 0.00822822698196468 F354 -H364 0.00609550831859718 V358 -F365 0.00157056887806295 L346 -F354 -0.00341498306740551 V352 -A357 -0.00417033093464703 I344 -A350 -0.00980108380119882 P338 -I344 -0.0125225360464813 I344 -F354 -0.0230565040216133 L346 -S361 -0.0248009730399983 Q347 -V358 -0.0316165017965542 V348 -V358 -0.0321255419690862 L346 -L359 -0.0322580029048893 A349 -C355 -0.0332713773310138 V360 -P366 -0.0350787209068195 Q347 -V352 -0.0351699405392053 Q347 -F354 -0.0370243961607652 V358 -R363 -0.0386532243425419 A350 -C355 -0.0417544190762438 W353 -V358 -0.0597119179615788 G342 -A350 -0.0604177574496477 A339 -G345 -0.06098573738672 F354 -S361 -0.063004090979631 L343 -Y351 -0.0645404156299243 W353 -V360 -0.06790644102185 G342 -Q347 -0.0703862855249371 L359 -P366 -0.0704649133712394 A349 -Y356 -0.0791800655731423 I344 -A349 -0.080580688151576 L346 -Y351 -0.080687972043771 V352 -S361 -0.0845695622915761 G345 -Y356 -0.089837430145252 V348 -V360 -0.0948658117812619 Y356 -S361 -0.098391016767355 G345 -A350 -0.0994051095248887 L359 -H364 -0.119854879688847 Q347 -W353 -0.128308646012994 V348 -C355 -0.131372980701387 I344 -V352 -0.133793033882991 A349 -F354 -0.137057992952004 C355 -V360 -0.149430083517759 I344 -Y351 -0.150057703994527 V348 -F354 -0.151885740297368 Q347 -L359 -0.152886415214696 G342 -V352 -0.153532945113988 L359 -F365 -0.155220714153028 L346 -A357 -0.155489972761699 G342 -Y351 -0.159636796766872 I344 -Y356 -0.169385062414195 L343 -Y356 -0.199184995226635 Y351 -L359 -0.201262431849347 G345 -W353 -0.212253098624824 V348 -L359 -0.216362807774983 V360 -F365 -0.222846720926215 L346 -C355 -0.22319368521917 L343 -V352 -0.232517570985795 A339 -I344 -0.235001629140252 S361 -P366 -0.274654098425327 V352 -L359 -0.275672522137087 G345 -C355 -0.33331763297512 F354 -V360 -0.374762897317594 P338 -L343 -0.49811247846933