[Mon Aug 29 17:38:19 2016] >Input file: TMM3H484M1G.pdb >TM segments: 364-379 MAIDEN score = 2.0393 Below is the ranking list of the residue pairs and their related pseudo-energy (the lower, the better). This includes inter-chain residue pairs. The maximum (least favorable) pairwise energy value has been set to 10. See the MAIDEN software article: Postic,G., Ghouzam,Y. and Gelly,J.C. (2015) Biochimie, 115, 155–161. ----------- ---------------- Calpha pair Empirical energy ----------- ---------------- Y371 -C378 1.38926217526351 D369 -C378 0.633031496147257 W374 -N379 0.371525331710386 D373 -C378 0.332898359210645 A372 -C378 0.20999716047772 F370 -C378 0.0904623498915997 F370 -T376 0.0904418829484115 D369 -N379 0.0838527232257058 Y371 -N379 0.0601033281766905 F370 -N379 0.0312281584378331 D369 -T376 0.0234997187879036 D369 -N377 0.00977686923490984 D373 -N379 -0.0268989922461534 D369 -C375 -0.0410139476921989 Y371 -N377 -0.0442603519859843 V368 -C378 -0.0518187462500741 F370 -C375 -0.0715224200563842 Y371 -T376 -0.0952185820359779 F370 -N377 -0.101881409878137 V368 -N379 -0.108812358165361 D369 -W374 -0.141076392034982 A372 -N379 -0.174059501332969 V368 -D373 -0.20453056051362 A372 -N377 -0.225701992129516