[Fri Aug 26 17:44:01 2016] >Input file: TMM4MNK2M1D.pdb >TM segments: 87-132 MAIDEN score = -3.6038 Below is the ranking list of the residue pairs and their related pseudo-energy (the lower, the better). This includes inter-chain residue pairs. The maximum (least favorable) pairwise energy value has been set to 10. See the MAIDEN software article: Postic,G., Ghouzam,Y. and Gelly,J.C. (2015) Biochimie, 115, 155–161. ----------- ---------------- Calpha pair Empirical energy ----------- ---------------- A96 -I101 1.5375628231124 K91 -A96 0.923190803513987 V116 -R123 0.868709441984213 A96 -I102 0.841085899286309 I102 -V108 0.601407166600002 I87 -M115 0.592030770584499 I102 -V107 0.56734290237122 L117 -H122 0.554896659500818 G103 -V108 0.533511108166414 T93 -A111 0.504388860783778 G103 -A111 0.327573279862561 S109 -I114 0.32518178980542 I102 -C130 0.322029099335179 A111 -G118 0.321929924433426 L90 -A95 0.317728404661855 A98 -G103 0.307067894532705 D97 -V108 0.303117778422133 T93 -P106 0.293137890982457 S94 -A111 0.274574185454359 S88 -M115 0.271106256857939 A113 -R123 0.263843140537377 L117 -R123 0.263425063520133 A95 -I101 0.261277657406953 V116 -L126 0.259632749169103 G89 -S94 0.245885709906679 S109 -A129 0.216768853510583 L92 -D97 0.211739049296076 S88 -P121 0.201481826641401 T93 -I102 0.195598511881803 I87 -G118 0.193299491908903 M115 -V125 0.189159513900002 V116 -P121 0.188474989668029 D97 -T104 0.185859750140769 G89 -A110 0.179552702098789 G103 -L131 0.179442566925538 L92 -G103 0.179151080519508 S94 -M115 0.179022127757763 T93 -A113 0.178521677066273 I112 -A129 0.173433045394046 L92 -S109 0.170517937094985 V108 -A129 0.16574765888525 A95 -V108 0.145335048611151 S109 -C130 0.142129013441598 A96 -I112 0.13231595686411 K91 -I102 0.128271704962748 I112 -A127 0.12792270700681 I87 -A95 0.125985539442903 L90 -I114 0.124724520166686 A96 -P106 0.124312039059338 S94 -V107 0.122924352358855 M115 -S124 0.118812350465717 A113 -R120 0.11869268463373 V116 -V125 0.117903324964493 S94 -A110 0.117593663074725 P121 -L126 0.117557636500929 S88 -I114 0.116796532481963 S88 -L117 0.115260945141852 A95 -A111 0.111413020338341 V108 -A132 0.108465031512944 A98 -V107 0.106516385076306 V100 -L105 0.104067912402421 S109 -A127 0.103436678490016 T93 -V116 0.103006688414694 A95 -G103 0.101568059567563 L90 -V107 0.10122037659091 L117 -A128 0.0962333758516585 I114 -A128 0.094852077502444 T93 -G103 0.094613762745832 A111 -A128 0.0938852378359134 L105 -I114 0.0927969291143853 L92 -V100 0.0921409748486166 I102 -L131 0.0920417442374317 K91 -V107 0.0917761289513321 A96 -L105 0.0911517965408342 I112 -L131 0.087595436656871 S94 -V108 0.0874599118953006 G99 -T104 0.0873282289793126 G89 -G118 0.0871241398263618 S109 -L117 0.0868852428544633 A96 -S109 0.0865192638993051 A113 -C130 0.0842627873924622 L105 -A129 0.0833597640963877 I112 -C130 0.0829864057376021 G118 -R123 0.0823943955831927 I101 -I112 0.0821000189235219 I114 -H122 0.0813440687053104 V108 -L131 0.0768772449000144 R123 -A128 0.0767229364633097 I101 -A110 0.0766192816923112 G89 -A113 0.0757018415535891 S88 -I112 0.0750019462830718 G89 -G99 0.0740631553500321 V107 -V116 0.0713113416370437 I102 -A113 0.0711618091486352 G89 -V116 0.0677690011883305 I87 -L92 0.0669327612980617 V107 -C130 0.0664438357555778 I101 -S109 0.0664166716498261 E119 -S124 0.0658639443406064 A113 -A129 0.0658030056234726 E119 -V125 0.0651157984119406 A96 -A110 0.0645908411080336 G118 -S124 0.064432903129104 K91 -I101 0.0632960538569249 I102 -A110 0.0630068987695862 L105 -L131 0.0629664555069915 I87 -S94 0.0624636273164418 G103 -I112 0.0620755460379918 M115 -A127 0.0618925182002674 L90 -I112 0.060682294286917 V107 -M115 0.0577463186505041 K91 -V100 0.0574581708608797 K91 -G99 0.057216838691456 L90 -I101 0.0564938611666328 G89 -I102 0.0563901497654964 S109 -G118 0.0558655097688456 A95 -T104 0.0554131409062033 I87 -A111 0.0536632789492071 A110 -A128 0.0530524013191598 A98 -V108 0.0525602722141123 G99 -V108 0.0525140130157151 S88 -A111 0.0506797991853842 L117 -L126 0.0497473361040202 G89 -V108 0.0485667044361229 S88 -D97 0.0483896111709484 L92 -P106 0.0476592087121386 A110 -G118 0.046773988356815 G103 -A132 0.0463748780949391 I87 -A113 0.0461713269366224 A110 -C130 0.0453599300332144 S88 -I102 0.0438188407535498 A113 -H122 0.0434535253389873 L90 -G99 0.0430356015953519 A111 -E119 0.0413974761196636 G99 -V107 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