[Fri Aug 26 17:52:13 2016] >Input file: TMM4MQV4M1D.pdb >TM segments: 52-70_ 81-92_ 98-115 MAIDEN score = -9.1279 Below is the ranking list of the residue pairs and their related pseudo-energy (the lower, the better). This includes inter-chain residue pairs. The maximum (least favorable) pairwise energy value has been set to 10. See the MAIDEN software article: Postic,G., Ghouzam,Y. and Gelly,J.C. (2015) Biochimie, 115, 155–161. ----------- ---------------- Calpha pair Empirical energy ----------- ---------------- W54 -A102 0.8751401106627 P57 -A102 0.774258496554359 W54 -A59 0.599692390684739 S55 -G60 0.583886434397373 V53 -I98 0.558889174620823 I92 -V100 0.558247291843247 W54 -Y99 0.54988739330249 A85 -I103 0.524898949122091 Q70 -Y115 0.461037420641853 W65 -V81 0.435538690818414 V53 -Y99 0.433817583759621 M84 -I103 0.419010410573169 T69 -E110 0.406914416770673 A89 -W101 0.398517022292893 W54 -I98 0.393939664189739 A85 -A105 0.351224393531411 L61 -M83 0.332748632338934 A102 -A108 0.321793413383691 L63 -R68 0.304188079846831 T86 -V100 0.3030993991027 A89 -I103 0.296663755893154 L58 -A105 0.294393946405695 W54 -W101 0.286460738483473 V53 -L58 0.272364620719046 M84 -W101 0.256809005381851 V56 -L61 0.255693962483426 L58 -Y99 0.246222313243583 T69 -L82 0.241581997423757 V53 -M84 0.241128472899215 L61 -T69 0.239149769496827 R68 -V81 0.237777295110512 A105 -E110 0.236057660915148 V81 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