[Fri Aug 26 17:57:22 2016] >Input file: TMM4MRP5M1D.pdb >TM segments: 22-37_ 86-104 MAIDEN score = -9.7311 Below is the ranking list of the residue pairs and their related pseudo-energy (the lower, the better). This includes inter-chain residue pairs. The maximum (least favorable) pairwise energy value has been set to 10. See the MAIDEN software article: Postic,G., Ghouzam,Y. and Gelly,J.C. (2015) Biochimie, 115, 155–161. ----------- ---------------- Calpha pair Empirical energy ----------- ---------------- T92 -I97 0.723857768854134 R90 -L96 0.596533905142985 M87 -T92 0.536412661920973 H86 -S95 0.358326148585152 A89 -S95 0.311373188315192 L25 -A30 0.286866499309252 A88 -H93 0.269673782107933 L96 -P104 0.231371357220728 S95 -P104 0.17259254016844 S95 -V103 0.159211877044447 M87 -H93 0.151727514561335 G31 -R36 0.12645393097637 A88 -A98 0.113148724213951 A91 -A100 0.112936351498302 M87 -I97 0.112425089868463 V22 -L27 0.0890175360408474 I28 -I37 0.0783772899363044 A98 -P104 0.0765880363304206 R90 -L99 0.0711718596182742 R90 -I97 0.0672172628931662 A89 -L99 0.0652789547698356 L25 -M34 0.064128192468571 A89 -A100 0.0629773048509121 M87 -L99 0.0623570844393573 L27 -R35 0.0620015916951644 A30 -I37 0.0616629054547051 G26 -M34 0.05482319017527 A89 -L94 0.0500321296062034 I97 -V103 0.0459616803246199 L94 -L101 0.043370821787855 A89 -A98 0.0431067806439112 A30 -R36 0.0361731567756678 H93 -A100 0.0200697335043563 H93 -L101 0.0187719413544505 I97 -P104 0.0149900565441343 L23 -G31 0.00793377438668497 L23 -F32 0.00504298222427124 L23 -I28 0.0036783391438977 A88 -I97 0.0031526091101225 A91 -V103 0.00313335751097998 M87 -A98 0.00247443224045263 G31 -I37 0.00139428154309229 A91 -L96 0.000329102508227708 F32 -I37 -0.0159204807024684 H93 -L102 -0.0169854425009928 V22 -A30 -0.0203608256576833 M87 -L96 -0.0230010576048301 L96 -L101 -0.0261209846191073 T92 -L102 -0.0282772224324339 I28 -R35 -0.0324725869668571 A89 -L96 -0.0407268816543722 G26 -R35 -0.050029287256776 T92 -L101 -0.0512875000062474 I24 -V33 -0.0598876755041662 L94 -L102 -0.0612039759497929 I24 -F32 -0.078939633506256 V22 -G31 -0.0809465908848459 T92 -A98 -0.0856287538161544 H86 -L96 -0.087009028040149 H86 -A91 -0.0917439305623962 L29 -R36 -0.0944794590887899 L94 -V103 -0.0980357417461342 L99 -P104 -0.10275463123454 A91 -L101 -0.103282536234065 A30 -R35 -0.106237278764675 T92 -V103 -0.112670931793462 A91 -L102 -0.118790593157682 A88 -L99 -0.124830878685906 R90 -A100 -0.126553658991965 G26 -V33 -0.13421305631937 H86 -T92 -0.139516885770238 A88 -L94 -0.144271228492601 M87 -S95 -0.145998138578767 L25 -F32 -0.149318137574324 L29 -R35 -0.159484721911923 G26 -F32 -0.163295390536597 L29 -I37 -0.163976007257417 T92 -A100 -0.166116837395068 A89 -I97 -0.168565803663297 I28 -R36 -0.171969996070407 V22 -I28 -0.172336346925723 L29 -M34 -0.173980060168406 I97 -L102 -0.18238512212141 G26 -G31 -0.19040492417167 A88 -L96 -0.200805950324007 R90 -A98 -0.211918842186789 S95 -L102 -0.217630380448786 S95 -L101 -0.217662686439383 L25 -V33 -0.226380436368603 A91 -A98 -0.229615062055773 L23 -A30 -0.236533390445941 L23 -L29 -0.23936943909425 A91 -L99 -0.249761874500839 H93 -L99 -0.255885914838916 V22 -L29 -0.257417240625411 A88 -S95 -0.258285277327882 H86 -L94 -0.270490666461645 L27 -M34 -0.280126882993634 I24 -G31 -0.280289765631978 M87 -L94 -0.282262967621749 S95 -A100 -0.283356023362519 L96 -V103 -0.305113080709273 L25 -G31 -0.305831158218865 T92 -L99 -0.308266900051879 I24 -A30 -0.317345021139562 L94 -A100 -0.318290023332995 L27 -F32 -0.337648326450432 I28 -M34 -0.340567660670082 L94 -L99 -0.356213272079358 A91 -I97 -0.36663489656774 I24 -L29 -0.380212996468961 L27 -V33 -0.383962381997041 A98 -V103 -0.422023105537524 H93 -A98 -0.436226337786763 L96 -L102 -0.453680992470434 I28 -V33 -0.471484313488733 R90 -S95 -0.49123382144519 H86 -H93 -0.652677408950429