[Mon Aug 29 17:55:01 2016] >Input file: TMM4MSM1M1G.pdb >TM segments: 375-388 MAIDEN score = -3.4654 Below is the ranking list of the residue pairs and their related pseudo-energy (the lower, the better). This includes inter-chain residue pairs. The maximum (least favorable) pairwise energy value has been set to 10. See the MAIDEN software article: Postic,G., Ghouzam,Y. and Gelly,J.C. (2015) Biochimie, 115, 155–161. ----------- ---------------- Calpha pair Empirical energy ----------- ---------------- A383 -S388 0.270449559427492 A379 -I387 0.184063418572195 L382 -I387 0.15816809441426 T380 -S388 0.136385383669784 V381 -I387 0.0973516571301207 A376 -F386 0.0789827128453453 A376 -I387 0.0778844252210207 A375 -L382 0.0755768007665107 A379 -S388 0.0530234231369899 V378 -L385 0.0496913131821035 A375 -A383 0.0346660781492414 V378 -I387 0.0298185614461604 A376 -L384 -0.00506207035211848 T380 -I387 -0.018258540601825 I377 -A383 -0.0383731395605995 I377 -F386 -0.0386838582972935 T380 -F386 -0.0403755261282139 V381 -F386 -0.0581583124965501 V378 -F386 -0.0857320980864529 A379 -F386 -0.113255841625202 I377 -I387 -0.114881351627595 A375 -L384 -0.1200033103143 A376 -L385 -0.128970970411474 A379 -L384 -0.143171052939515 I377 -L385 -0.145156700895558 L382 -S388 -0.179039090044625 A375 -V381 -0.17988213547922 V378 -A383 -0.205598974131995 A375 -T380 -0.23009992443621 A376 -A383 -0.24790597666166 I377 -L384 -0.257317954963471 V381 -S388 -0.258517183176584 A379 -L385 -0.311224885853812 A376 -L382 -0.311261269246137 T380 -L385 -0.335121007432242 V378 -L384 -0.347704890388695 I377 -L382 -0.380038865169271 A376 -V381 -0.417621116065741