[Fri Aug 26 18:07:41 2016] >Input file: TMM4MUV2M1D.pdb >TM segments: 98-113 MAIDEN score = -5.4088 Below is the ranking list of the residue pairs and their related pseudo-energy (the lower, the better). This includes inter-chain residue pairs. The maximum (least favorable) pairwise energy value has been set to 10. See the MAIDEN software article: Postic,G., Ghouzam,Y. and Gelly,J.C. (2015) Biochimie, 115, 155–161. ----------- ---------------- Calpha pair Empirical energy ----------- ---------------- M103 -L108 0.243109307038668 H98 -M103 0.164233651201418 H98 -V106 0.139010156960974 H98 -P104 0.135764914968042 V106 -L113 0.128566104859485 L102 -L110 0.109584448156732 L102 -M109 0.0910780001250974 M103 -Y112 0.075095676845125 M103 -L110 0.0738310613174971 F101 -L110 0.0461280744077461 M103 -M109 0.0303503268398859 F100 -M109 -0.00389748347523067 V99 -L108 -0.0119633527627263 H98 -F105 -0.0129097182654391 F101 -M109 -0.0303437468756753 V107 -Y112 -0.0424009879662712 F105 -Y112 -0.046205621478693 F105 -L113 -0.0852723827773061 P104 -Y112 -0.0856894100298087 F101 -V106 -0.0936931445437299 V99 -V107 -0.106661198367912 F101 -L108 -0.112269798522227 F100 -L108 -0.122252684058234 L102 -Y111 -0.127003505695554 F105 -L110 -0.127672811594715 M103 -Y111 -0.131465171600791 P104 -L113 -0.151360019157718 P104 -Y111 -0.158658666939906 V107 -L113 -0.163099610481699 F105 -Y111 -0.174088227461798 V99 -V106 -0.195047620282669 P104 -M109 -0.200471620192931 V106 -Y111 -0.229945351357496 L102 -V107 -0.246767277272156 F100 -V106 -0.252660107388722 V99 -P104 -0.255050709826345 H98 -V107 -0.276589727059554 F100 -V107 -0.281371807632113 F101 -V107 -0.346525565883918 L108 -L113 -0.355297408081268 V99 -F105 -0.366812847563231 V106 -Y112 -0.378382692070988 F100 -F105 -0.446000203044913 L102 -L108 -0.458914671432699 P104 -L110 -0.568827568881855