[Mon Aug 29 18:00:44 2016] >Input file: TMM4MUZ6M1G.pdb >TM segments: 27-33_ 49-64 MAIDEN score = -5.7086 Below is the ranking list of the residue pairs and their related pseudo-energy (the lower, the better). This includes inter-chain residue pairs. The maximum (least favorable) pairwise energy value has been set to 10. See the MAIDEN software article: Postic,G., Ghouzam,Y. and Gelly,J.C. (2015) Biochimie, 115, 155–161. ----------- ---------------- Calpha pair Empirical energy ----------- ---------------- L56 -G63 0.288945223013177 L58 -G63 0.286003582991784 V52 -L58 0.209849979771194 V49 -L56 0.11925732734138 M55 -G63 0.0906071694921255 I54 -G63 0.0575638842465165 V52 -G62 0.0507830685616057 A50 -L58 0.0446359728747674 I54 -G62 0.0335346357084982 I51 -W59 0.0248503329931722 I54 -W59 0.0116816713619112 L53 -G62 0.00689830629601396 I51 -T61 -0.00189909229121232 T57 -G63 -0.00431077743234409 V52 -T61 -0.0158575276375204 L56 -G64 -0.0226484367780841 L53 -L58 -0.0253749192277866 M55 -G64 -0.0620318674667004 T57 -G64 -0.0651968667281513 V49 -T57 -0.0673694262528572 L56 -T61 -0.0756196428570846 V52 -V60 -0.0953845395813946 V49 -L58 -0.105079467295904 I51 -V60 -0.105357303717844 L53 -T61 -0.112519518109445 A50 -T57 -0.114804833816349 A50 -W59 -0.129181597321739 M55 -G62 -0.158395284488699 A50 -L56 -0.164330232105478 L58 -G64 -0.17332899058578 V52 -T57 -0.187308662469817 M55 -V60 -0.200103259701685 M55 -T61 -0.202946390876366 W59 -G64 -0.223757440761612 I54 -T61 -0.236151697862691 L53 -V60 -0.280878045846154 L53 -W59 -0.291256060855286 T57 -G62 -0.310492407035771 V49 -M55 -0.323307137748645 L56 -G62 -0.329828228269629 A50 -M55 -0.338299023735904 I51 -L56 -0.390380013797735 V52 -W59 -0.392856465738181 I51 -T57 -0.393748600346641 I51 -L58 -0.417271096179296 V49 -I54 -0.447895639818311 I54 -V60 -0.46804024716219