[Fri Aug 26 18:14:02 2016] >Input file: TMM4MXL2M1D.pdb >TM segments: 58-85_ 87-107 MAIDEN score = -12.4349 Below is the ranking list of the residue pairs and their related pseudo-energy (the lower, the better). This includes inter-chain residue pairs. The maximum (least favorable) pairwise energy value has been set to 10. See the MAIDEN software article: Postic,G., Ghouzam,Y. and Gelly,J.C. (2015) Biochimie, 115, 155–161. ----------- ---------------- Calpha pair Empirical energy ----------- ---------------- V76 -A82 0.60271657425783 L84 -S89 0.569014311972237 L77 -A82 0.550630248317493 Q81 -M95 0.51129921019867 R80 -M95 0.442317304749781 L77 -D93 0.439100547368225 V76 -R91 0.434501619280834 A82 -S89 0.420880046299577 L77 -Q90 0.365226737489953 L77 -S89 0.363423685526351 Q67 -E75 0.318915028361561 E75 -Q90 0.317619863656557 L77 -I92 0.316749218494987 E83 -L88 0.313275105010804 G78 -Q90 0.293501043403894 A82 -R91 0.292169754921334 R69 -E75 0.287326502299531 S89 -G94 0.286092991866826 A79 -S89 0.261495808056013 T74 -A79 0.259170357822132 M73 -Q90 0.254649287427837 M73 -R80 0.247158899306805 M73 -R91 0.244972472173815 E75 -Q81 0.240128195883053 A71 -A79 0.23316060622944 A79 -I92 0.227242421453463 D93 -G100 0.218469486804117 T74 -Q81 0.190994012758135 G78 -D93 0.18783275436847 M95 -S104 0.187702956389792 E75 -H97 0.175701270169397 V76 -E83 0.174853398734854 G78 -I92 0.169157763932583 T74 -T96 0.157831229025054 H97 -S104 0.153944808761477 G78 -L88 0.14968684751523 N85 -R91 0.149479345455644 Q81 -G94 0.149084825484386 E75 -R91 0.145596712461212 A82 -M95 0.143464633183751 G78 -G100 0.142295566040841 Q90 -R98 0.142184736342732 E83 -Q90 0.140308059905465 Q81 -I92 0.137587185794455 G68 -G78 0.136792352597952 A82 -Q90 0.135156367445613 E65 -E75 0.12338698611907 A62 -Q67 0.123301362138824 T74 -S89 0.121848647365923 G78 -E83 0.121347253086496 E75 -E83 0.120334922091674 Q90 -H97 0.119529008499752 G94 -S102 0.119186321927223 A79 -A101 0.118745157705591 A72 -R80 0.114480188200495 R80 -I92 0.112409663395158 A79 -L88 0.112198080401114 R91 -R98 0.10844716858114 A61 -R69 0.10814482582679 M73 -G94 0.107660838420557 T96 -S104 0.107506387124526 I92 -I99 0.106297191948841 R80 -H97 0.103890034137726 M66 -T74 0.091038610237294 E75 -D93 0.0906217180009383 M73 -E83 0.0874496293161701 L84 -I92 0.0864171096566984 A82 -S87 0.0820515886426278 R80 -L88 0.0795825174452027 R80 -Q90 0.0795589343270087 D93 -A101 0.0780254111227219 V76 -L84 0.0760236277185442 R98 -I103 0.074174225755284 L77 -G94 0.0735331272978552 L59 -E65 0.0715454229812169 T74 -G94 0.0712682250791019 A71 -G94 0.0703509196453527 Q81 -I99 0.068276936690879 R69 -V76 0.0671620289617625 R69 -L77 0.0631645233116904 G78 -I99 0.0619482481614471 E75 -R98 0.0616643946228992 L77 -R91 0.0591147249121526 G100 -T107 0.0581413817290413 Q63 -A71 0.0573833034680227 I70 -G78 0.0547411381153534 E83 -G94 0.0533200187979603 I70 -E75 0.0521047880028611 L77 -S87 0.0507503573755455 I99 -T107 0.046195305589789 I92 -G100 0.0454466834579037 G78 -L84 0.0454388554831282 T74 -M95 0.0453142051019463 A79 -M95 0.0385656646426087 L77 -T96 0.0348017559979521 V76 -M95 0.0324570920044094 A82 -T96 0.0320368791461998 L84 -G94 0.0274752565568592 L84 -R91 0.0242927116682257 V76 -Q81 0.0230646579159188 A72 -G94 0.0213740326862304 Q81 -H97 0.0190126487073106 M73 -S89 0.018092615864542 L77 -N85 0.0176430784418358 R98 -E105 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-0.139631826784173 D93 -I99 -0.141779495178616 E65 -M73 -0.14253604020311 Q63 -R69 -0.142712601156239 H97 -E105 -0.151497044559275 R80 -G100 -0.152328740291175 M73 -D93 -0.154921427991263 M95 -S102 -0.159058181521878 R91 -G100 -0.161478877514993 G94 -I99 -0.162628843727729 A71 -R91 -0.163456333887581 A79 -L84 -0.164658389492213 G78 -T96 -0.164677721077307 A101 -T107 -0.166313421291583 Q81 -T96 -0.166572492709353 R80 -G94 -0.171454905713902 R69 -G78 -0.171828918813322 E65 -T74 -0.174902670848009 A71 -R80 -0.174917318711219 A79 -T96 -0.17509776145438 T96 -I103 -0.175646513763386 G68 -E75 -0.181481475842581 A82 -R98 -0.18243626817459 A71 -G78 -0.188001765047067 L77 -L88 -0.188321127263453 Q63 -I70 -0.18892446574564 D93 -R98 -0.1890394682629 V76 -I92 -0.191171717097375 A72 -A79 -0.192473396859533 I99 -S104 -0.195344407444488 I99 -E105 -0.196115146188364 A61 -Q67 -0.196505558671948 E75 -I92 -0.197569697883161 T64 -R69 -0.198062904927639 R69 -T74 -0.202806561829554 R80 -D93 -0.203310824651936 A79 -R98 -0.205565648362993 Q90 -T96 -0.205885188162845 E75 -T96 -0.208896078625875 G78 -R91 -0.210682326718959 I99 -Q106 -0.214819196767878 T74 -Q90 -0.218777670692614 V76 -Q90 -0.218784570784512 A72 -L77 -0.221302717770806 A58 -T64 -0.22240584762295 I92 -H97 -0.223198600738256 T96 -S102 -0.223254075656006 A79 -G94 -0.223596559799286 A79 -Q90 -0.224985425737349 I60 -Q67 -0.225026746394425 I60 -E65 -0.230013127009134 V76 -H97 -0.231781018894254 E65 -I70 -0.234050518619114 E75 -G94 -0.235546149251702 G68 -T74 -0.23751414264766 G78 -H97 -0.240717809464755 I60 -M66 -0.241510845463242 G68 -M73 -0.243094602326199 A62 -R69 -0.245142346290175 V76 -S89 -0.250281966541569 A72 -G78 -0.26569305871615 I70 -V76 -0.266519264309439 A62 -G68 -0.268112063092529 Q90 -M95 -0.268487519249678 G100 -E105 -0.276897915964351 L59 -T64 -0.277352653645861 L59 -M66 -0.280901623308979 V76 -R98 -0.282680773018718 H97 -Q106 -0.284313696685974 Q67 -M73 -0.28457406393095 T74 -I92 -0.285270958786722 A71 -L77 -0.286479233260175 A58 -E65 -0.293987611505094 E65 -A72 -0.298410590841924 V76 -D93 -0.299520717561537 A61 -M66 -0.300498853386009 L77 -M95 -0.305278330487449 I92 -R98 -0.308628510214431 Q81 -L88 -0.310061689802852 M73 -G78 -0.313227676048573 M95 -G100 -0.317235205239477 A79 -R91 -0.323573190713026 M66 -A71 -0.338529371262524 H97 -S102 -0.341602483351417 T96 -A101 -0.375370901182651 T64 -I70 -0.394942461880698 M95 -A101 -0.410288887827323 M66 -A72 -0.41178358878948 L84 -Q90 -0.412333656350336 M73 -A79 -0.413371703001179 A71 -V76 -0.418098261295846 A79 -H97 -0.436687831380341 Q81 -R91 -0.476480064821074 A79 -D93 -0.478026918824916 H97 -I103 -0.51869393947202