[Fri Aug 26 16:26:13 2016] >Input file: TMM4MYE9M1D.pdb >TM segments: 236-252_ 254-289 MAIDEN score = -5.9053 Below is the ranking list of the residue pairs and their related pseudo-energy (the lower, the better). This includes inter-chain residue pairs. The maximum (least favorable) pairwise energy value has been set to 10. See the MAIDEN software article: Postic,G., Ghouzam,Y. and Gelly,J.C. (2015) Biochimie, 115, 155–161. ----------- ---------------- Calpha pair Empirical energy ----------- ---------------- I263 -E268 1.27291458105612 L258 -L271 0.864575696019481 I263 -D269 0.669465087999292 A250 -L255 0.652257811212967 M257 -I263 0.574155293865349 L258 -M270 0.565544337358407 Y247 -A254 0.51584990277901 R244 -I252 0.512749728099656 L258 -D269 0.509698691559143 I246 -L255 0.475484216587938 L258 -I263 0.463863310026967 S242 -L280 0.459404913885952 H239 -S285 0.39712932568074 H236 -S281 0.395762570539231 S242 -Y282 0.392346967000987 H236 -S285 0.390136379447851 H236 -S283 0.385446658392678 A238 -A286 0.375722011619933 I263 -M270 0.361846197433056 Y247 -L255 0.34461760250032 E268 -G274 0.343827370502393 Q245 -Y282 0.340727828274906 K240 -S285 0.333619122363788 V237 -S242 0.331554804699573 V259 -D269 0.327769400249099 L243 -R248 0.314739718045761 G261 -G274 0.311977751421296 I246 -G251 0.311518708722537 A249 -S283 0.308663686077709 Y247 -G274 0.308289006966023 H236 -A286 0.308021561792622 K240 -S283 0.298036544596813 H241 -A286 0.290819861718943 Q245 -E287 0.28284651827483 G251 -L258 0.277193410370304 G264 -M270 0.258738732770807 A238 -R244 0.255744898191789 H236 -L280 0.252637961350407 L256 -D262 0.248392167551366 H236 -H241 0.241657375625512 I252 -M257 0.236154170083982 H239 -R244 0.229559573468482 D269 -G275 0.225899854526304 K240 -S281 0.217969042275384 G261 -D269 0.216730824021237 Q273 -L278 0.206423711292645 A249 -S281 0.206104242953273 L258 -V272 0.205154523432516 S242 -Y247 0.205148362534221 A249 -Y282 0.202326542691036 D262 -A267 0.201319577640004 Q245 -A250 0.189814258936296 A260 -D269 0.183655963044987 G261 -L271 0.181483525375713 Y247 -S281 0.177953246198383 I263 -L271 0.177383174282686 S242 -L277 0.17385110546609 V237 -E289 0.17242200999795 Q245 -L280 0.170215211061013 R244 -S285 0.166563151634228 Y247 -S283 0.166432817988817 A249 -G275 0.161636831452177 Y247 -I252 0.161032773650271 S242 -G275 0.159740331734557 G264 -G274 0.15935121213189 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