[Fri Aug 26 16:27:14 2016] >Input file: TMM4MZ41M1D.pdb >TM segments: 46-66 MAIDEN score = -0.5464 Below is the ranking list of the residue pairs and their related pseudo-energy (the lower, the better). This includes inter-chain residue pairs. The maximum (least favorable) pairwise energy value has been set to 10. See the MAIDEN software article: Postic,G., Ghouzam,Y. and Gelly,J.C. (2015) Biochimie, 115, 155–161. ----------- ---------------- Calpha pair Empirical energy ----------- ---------------- I60 -I65 1.07777035269032 I60 -S66 0.751638960299342 Q48 -Y55 0.46824511952425 L59 -I65 0.428347035239232 S53 -L59 0.262871392079421 S53 -A61 0.260935780614208 Y55 -S64 0.2251977840364 S53 -S64 0.204205379178407 G57 -I65 0.17269646690356 L49 -G56 0.16971613716033 A51 -S64 0.124891682016846 A52 -G58 0.11650637064526 A52 -L59 0.116333475423863 A50 -G58 0.115979837862212 I54 -A62 0.10614487763381 S46 -A51 0.103141752129408 A50 -L59 0.0949004729513021 I54 -L63 0.0741855364843738 A50 -I60 0.0693863473070189 I54 -A61 0.0601264162391102 A51 -G56 0.0555618215023298 A50 -Y55 0.0538773189323969 G56 -S66 0.0407801741295797 Y55 -I60 0.0372534672663711 G58 -S66 0.0372186547541081 G57 -S66 0.0370495348627743 Y55 -I65 0.0233577787759769 L49 -G58 0.0227677772553971 A50 -G57 0.0198922764048719 L49 -G57 0.019297790147444 S53 -A62 0.014442535118719 A52 -A61 0.014407162586088 A61 -S66 -0.00162360414722729 A51 -A61 -0.01083729904928 G58 -I65 -0.0124540476772133 Q48 -G56 -0.0244051422562717 I54 -S64 -0.0329172892317751 S53 -I65 -0.0521953069297028 L49 -I54 -0.0524967616484604 Y55 -A62 -0.0554265739580355 L59 -S64 -0.0764217156211986 Y55 -L63 -0.0785159457299136 A52 -I60 -0.0858499502362289 A51 -I60 -0.090505334618713 Y55 -A61 -0.104352173346874 A50 -G56 -0.110344806830142 G56 -S64 -0.125713949290473 G58 -S64 -0.135137655493089 I54 -L59 -0.152784696660511 L49 -L59 -0.15305874445026 G57 -S64 -0.153908248715073 A51 -G57 -0.155925880730745 S53 -L63 -0.158074850998501 G56 -L63 -0.162064596549777 S53 -G58 -0.164167290994761 A51 -G58 -0.166770479176215 L49 -Y55 -0.18696337031813 G56 -I65 -0.191297938729173 A51 -L59 -0.21717144194732 L59 -S66 -0.22773032215537 I54 -I60 -0.23713247709335 S53 -I60 -0.245442248331448 G56 -A62 -0.260767609763698 G58 -L63 -0.33224270997321 G57 -L63 -0.338078050750222 G56 -A61 -0.441418222713138 G57 -A62 -0.44283207972754 A52 -G57 -0.488459173608595