[Fri Aug 26 16:27:23 2016] >Input file: TMM4MZ74M1D.pdb >TM segments: 59-72_ 78-89 MAIDEN score = -4.7658 Below is the ranking list of the residue pairs and their related pseudo-energy (the lower, the better). This includes inter-chain residue pairs. The maximum (least favorable) pairwise energy value has been set to 10. See the MAIDEN software article: Postic,G., Ghouzam,Y. and Gelly,J.C. (2015) Biochimie, 115, 155–161. ----------- ---------------- Calpha pair Empirical energy ----------- ---------------- C65 -E87 1.05645072357204 L64 -E87 0.574773448891516 V71 -R78 0.472306256065121 D68 -L84 0.42116857349289 I59 -A89 0.346562227419592 G60 -E87 0.317070212357937 L64 -G85 0.289729091475061 S70 -G85 0.278517229789659 V71 -L84 0.272733878837353 D68 -H86 0.234232357944286 G63 -A88 0.190380362822013 A62 -G85 0.15373849603673 H66 -A88 0.150258686511491 I59 -A88 0.149603819530106 A62 -D68 0.148529335198618 S67 -M82 0.138777073243879 A61 -H86 0.133589379084562 S67 -L84 0.129305804294395 A62 -H86 0.126984213571092 S70 -H86 0.124342706411689 A61 -E87 0.117782883941127 P79 -L84 0.116265634327434 D68 -G85 0.111511858117866 L64 -S70 0.106764231327185 S70 -P79 0.104428610436594 A62 -A89 0.100602489826592 H66 -L84 0.0988785370933387 A62 -S67 0.0948406917548192 V71 -H86 0.0947584993409758 C65 -I72 0.0904362386186736 S67 -E87 0.0904063787677929 C65 -A88 0.085201364086233 I72 -P81 0.0836360882758327 S67 -A83 0.0795832688520255 S70 -R78 0.0786287597935501 V80 -G85 0.0738901611806293 S67 -A88 0.0687713228683924 I59 -H86 0.0629716898879611 G60 -A88 0.0590549721749074 A62 -A88 0.0556490915885792 H66 -V71 0.0505398539761241 A83 -A88 0.0474132350254743 S70 -M82 0.0414913101075143 G60 -H86 0.0388457982299868 G60 -A89 0.0384912187288169 G60 -G85 0.0383824198771254 A61 -L84 0.0380893289259188 L64 -A83 0.0330205837689124 L69 -A83 0.0328221188624869 D68 -A83 0.0324378364302751 L69 -H86 0.0311497813767945 H66 -E87 0.0265581303106766 L69 -R78 0.0169483544250602 G63 -A83 0.0144185081130814 I72 -H86 0.0122228737285202 R78 -G85 0.0119965494218786 A62 -A83 0.0117834054782465 G63 -L69 0.0114203190189115 I59 -G85 0.0112265449200804 S70 -A83 0.00997955170894915 I72 -P79 0.00655697257527277 R78 -H86 0.00366306748441847 D68 -A88 0.000251602342738355 L69 -M82 -0.000811379809329438 G63 -D68 -0.00641301901856295 D68 -P79 -0.013760804264951 V71 -P79 -0.02761216812935 V71 -G85 -0.0288020475980977 C65 -A89 -0.0296965078251381 C65 -A83 -0.0303991362124496 G63 -S70 -0.0308004287080912 L64 -A88 -0.0386023706724734 G63 -I72 -0.0408913704519662 L64 -A89 -0.0446804629648643 D68 -R78 -0.0499376714704833 D68 -P81 -0.0562614231982828 V71 -P81 -0.0581491990981844 A61 -A83 -0.0738865551140124 S67 -R78 -0.0743498998383222 A61 -G85 -0.0749382354166954 G63 -V71 -0.0787538022436811 S70 -V80 -0.0790937930759166 I59 -L84 -0.0837809735832442 P79 -G85 -0.0853008476605814 I72 -A83 -0.0887601484080776 G63 -E87 -0.0940918946273532 L64 -I72 -0.094727556969281 I59 -A83 -0.0947810135169025 I59 -L64 -0.0958614330281162 D68 -E87 -0.0971906998296377 I72 -R78 -0.0979474146757671 L64 -V71 -0.0981336921839544 G63 -H86 -0.103374312869152 C65 -G85 -0.125371474697313 D68 -V80 -0.126015488422746 S67 -I72 -0.12959520096198 A61 -D68 -0.134242462837756 L69 -E87 -0.139439379635332 L69 -G85 -0.139533135584002 C65 -H86 -0.15355477267147 A62 -L69 -0.160836596788669 G63 -L84 -0.163024739877009 V71 -E87 -0.16607023803719 I72 -V80 -0.172695048479439 A62 -L84 -0.178591188413356 R78 -L84 -0.186001628325184 I59 -E87 -0.197095703674828 H66 -G85 -0.199858952838657 R78 -A83 -0.20712468972062 G63 -A89 -0.212884364793138 D68 -M82 -0.216659146999531 S70 -L84 -0.218419330880957 G63 -G85 -0.239606307435325 S67 -G85 -0.251458228138851 I72 -L84 -0.266444998225232 V71 -V80 -0.287810663803337 I72 -G85 -0.297098503453565 L64 -L69 -0.313082521021155 V71 -A83 -0.314207010311263 A62 -E87 -0.321955843244184 V71 -M82 -0.323917680985427 S67 -H86 -0.335083324009153 C65 -S70 -0.362921694682218 A61 -A89 -0.369846910559804 H66 -H86 -0.372071514927651 A61 -A88 -0.379852471430399 I72 -M82 -0.395694938806903 L64 -H86 -0.420634300106459 L69 -L84 -0.457063548143417 L64 -L84 -0.464099933652623 C65 -V71 -0.479980406865192 H66 -I72 -0.507845500952792 C65 -L84 -0.549131325278558