[Fri Aug 26 16:25:24 2016] >Input file: TMP08810S3D.pdb >TM segments: 225-245 MAIDEN score = -0.7212 Below is the ranking list of the residue pairs and their related pseudo-energy (the lower, the better). This includes inter-chain residue pairs. The maximum (least favorable) pairwise energy value has been set to 10. See the MAIDEN software article: Postic,G., Ghouzam,Y. and Gelly,J.C. (2015) Biochimie, 115, 155–161. ----------- ---------------- Calpha pair Empirical energy ----------- ---------------- Y234 -Y240 0.141266271738276 A236 -L242 0.0532438774546371 W227 -F232 0.0450875604050172 R233 -P238 0.034752151272019 F232 -P238 0.0179919759454439 C235 -A241 0.0146586699441884 T229 -Y234 -0.00435449912327668 C235 -L242 -0.0440297847371331 Y234 -A241 -0.0644809821494494 Y234 -G239 -0.0716945802131601 P237 -L243 -0.149714041847901 P237 -L242 -0.181642418978138 A236 -A241 -0.232022238348702 C235 -Y240 -0.280248666383214