[Mon Aug 29 16:45:24 2016] >Input file: TMP15831M1G.pdb >TM segments: 556-590_ 628-650 MAIDEN score = -27.9601 Below is the ranking list of the residue pairs and their related pseudo-energy (the lower, the better). This includes inter-chain residue pairs. The maximum (least favorable) pairwise energy value has been set to 10. See the MAIDEN software article: Postic,G., Ghouzam,Y. and Gelly,J.C. (2015) Biochimie, 115, 155–161. ----------- ---------------- Calpha pair Empirical energy ----------- ---------------- K561 -L643 0.886700625575177 I584 -K589 0.573133872295149 V557 -Q647 0.522487304237418 Q578 -K586 0.439156137157527 V571 -V632 0.405536555847476 V557 -A646 0.386068150640418 K561 -E644 0.377826797909108 R568 -N638 0.34166213741179 Q564 -E644 0.336769007886746 R562 -L567 0.326743522732971 P556 -Q647 0.318596072812177 V557 -L643 0.316548006954644 V557 -R562 0.301461535641994 K561 -A637 0.2951582664291 P556 -Q650 0.290359364616398 V560 -L643 0.279692524117623 R580 -K586 0.267489500514079 K575 -A583 0.253567861065119 K561 -R568 0.239819999030979 Q564 -Q647 0.228831270622259 V560 -E565 0.227236015833951 E585 -D590 0.219134506429416 R568 -K575 0.2180029441631 P556 -L643 0.217545898098664 W572 -K630 0.213963787171887 P556 -Q649 0.212605157333048 R568 -N576 0.208402044080532 K561 -I639 0.197999494982941 E565 -A637 0.196876533983838 L567 -D636 0.187090986521584 A579 -E629 0.181735320942822 A583 -D590 0.179214856697784 K630 -L635 0.176864466513102 A637 -E645 0.176746093310496 L567 -K575 0.174119161908042 Q563 -R568 0.172721197008745 K561 -L569 0.172664208941228 H633 -N638 0.168922767306668 T570 -D636 0.165858077187967 V571 -A637 0.162788794479407 T582 -D590 0.160116509172309 T570 -Q578 0.157129041476606 D636 -A641 0.154661497556352 V560 -E644 0.15299497817512 Q578 -E629 0.150577260262887 K561 -L566 0.149181534465886 R562 -Q647 0.146461177468788 V571 -E629 0.146202934970542 V557 -I648 0.141962412294943 W628 -D636 0.138080918866491 V557 -A641 0.136825064835094 R568 -Q631 0.130598627529803 E565 -N638 0.129798524951296 N576 -E585 0.126454515900006 E629 -N638 0.125627667510932 A641 -Q649 0.12548673687781 Q564 -I639 0.122780907985359 V560 -A641 0.121780022245194 V571 -L635 0.119206312647858 Q564 -H633 0.118084023653791 R562 -T640 0.113910408611146 E629 -F634 0.111926183868705 K575 -D636 0.110355106071931 L566 -A637 0.11005318302161 L567 -T640 0.109094502446411 T574 -H633 0.108726989784645 G573 -E629 0.1073702505371 D636 -E644 0.103741964103775 W572 -R580 0.103649521663106 V557 -T640 0.102750174129704 V560 -A637 0.102372199762073 R568 -E629 0.101677384516445 N638 -A646 0.101273348642579 E629 -L635 0.101039410725432 Q631 -N638 0.0983012924908098 L569 -Q578 0.0972821439507545 Q564 -L569 0.0958008994839217 T574 -K630 0.0936633783812586 V571 -A579 0.0924986602665263 V559 -A646 0.0893968231084137 R562 -R568 0.0871653396009353 A579 -Y587 0.084189486785287 V560 -D636 0.0836120985232878 L642 -Q647 0.0794279359709535 H633 -A641 0.0767725910166934 L567 -F634 0.0747967734105834 E565 -G573 0.0742811562534702 N576 -A583 0.0742774963987305 E565 -E644 0.0735505319520572 E629 -A637 0.0728747394329572 T570 -H633 0.0706089910384051 T570 -V632 0.0691314955204763 W572 -D636 0.0657859482126768 R562 -T570 0.0628328997021653 V632 -A641 0.0623131936287287 V560 -Q647 0.0622169475960023 G573 -V632 0.0616815132229847 V560 -R568 0.0608163044545 T582 -E629 0.0581824150478267 H633 -T640 0.0577091672069368 R562 -A641 0.055666072447567 P556 -Q564 0.055548858182715 W628 -H633 0.0554771231790845 L566 -T574 0.0543529593176348 D558 -T640 0.0540416245446966 V571 -Q631 0.0524603997626738 Q564 -A637 0.0518640993196835 E565 -L635 0.0479310171943785 K575 -Q631 0.0472775559996483 E565 -H633 0.0462201179695093 L567 -H633 0.0460950635117165 L577 -E629 0.0450037321736447 R568 -D636 0.0419677672877548 K561 -T570 0.0416919927788638 D558 -L566 0.0415012545215001 V560 -N638 0.0407413213744716 Q564 -G573 0.0390537367904074 W628 -L635 0.0390071852877307 R562 -I639 0.0379191015004379 W572 -F634 0.0377567590335277 T574 -D636 0.036314382919103 T570 -Q631 0.0358081096251961 T570 -N576 0.0353983567115213 V571 -K630 0.0334978729757133 N576 -T582 0.0316080957880502 V559 -Q564 0.0315380264975538 I639 -Q647 0.0313953768134065 V559 -Q647 0.031277917253365 Q564 -D636 0.0282232024298263 V557 -E565 0.0276069826520268 L567 -Q631 0.0272020092211296 V581 -K586 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