[Fri Aug 26 16:43:39 2016] >Input file: TMP19503S2D.pdb >TM segments: 229-249 MAIDEN score = -0.9583 Below is the ranking list of the residue pairs and their related pseudo-energy (the lower, the better). This includes inter-chain residue pairs. The maximum (least favorable) pairwise energy value has been set to 10. See the MAIDEN software article: Postic,G., Ghouzam,Y. and Gelly,J.C. (2015) Biochimie, 115, 155–161. ----------- ---------------- Calpha pair Empirical energy ----------- ---------------- Y238 -Y244 0.143336052931911 R235 -A240 0.064727455257728 A240 -L246 0.052108612402078 R237 -P242 0.0365675671979728 C239 -A245 0.0156483210060425 F236 -P242 0.00775320126620516 H229 -I234 -0.0227123037659543 C239 -L246 -0.0408849219600942 W231 -F236 -0.0474961402183425 Y238 -G243 -0.0685455496512744 Y238 -A245 -0.0693749210880652 Y230 -R235 -0.0850536902899218 A233 -Y238 -0.0997602600132534 P241 -L247 -0.149838348734741 P241 -L246 -0.183632554379448 A240 -A245 -0.232154239576588 C239 -Y244 -0.278975653208677