[Fri Aug 26 17:05:57 2016] >Input file: TMP57088M1D.pdb >TM segments: 36-49_ 56-69 MAIDEN score = -6.2722 Below is the ranking list of the residue pairs and their related pseudo-energy (the lower, the better). This includes inter-chain residue pairs. The maximum (least favorable) pairwise energy value has been set to 10. See the MAIDEN software article: Postic,G., Ghouzam,Y. and Gelly,J.C. (2015) Biochimie, 115, 155–161. ----------- ---------------- Calpha pair Empirical energy ----------- ---------------- H49 -R57 1.20308265689797 L64 -R69 0.568440348950295 L48 -A58 0.387881507854754 H49 -Q56 0.369594968597679 Y36 -P44 0.303677403401431 Y36 -R69 0.287126414856838 L40 -G47 0.271752570016687 G47 -Q56 0.200040608543574 A61 -R69 0.197373770758059 L46 -N62 0.195240034340719 Q56 -N62 0.170390932234525 G47 -L60 0.166637628346297 P44 -L59 0.165968298972536 G47 -A61 0.150117598556266 F41 -G47 0.1342378428158 H49 -L59 0.130802627823195 L46 -L59 0.124735681822518 P44 -A58 0.122628769583135 P44 -H49 0.118848675153059 H49 -A63 0.117175574112794 G47 -A63 0.106505996082487 L40 -L48 0.10433128684636 A39 -L46 0.10243711999531 C37 -S66 0.0860318844569711 F41 -L48 0.08287791981396 G47 -S66 0.0817455655044717 A58 -S66 0.0762239639822173 L40 -S66 0.0747668444320624 R57 -T65 0.0732205934188497 Q56 -L64 0.07172989969279 V42 -L48 0.0712360839967952 S38 -L45 0.0687830515247136 P44 -L60 0.0677058978945446 L45 -A58 0.0628057913650064 Q56 -A63 0.0520207849616229 L43 -L59 0.0485062078100551 L40 -N62 0.0425458050325407 L43 -H49 0.0391523513236053 L48 -L60 0.0355862650114256 L43 -A58 0.0342508893360494 Q56 -T65 0.028911866472936 L43 -T65 0.0238211528487744 A39 -S66 0.0186967761692909 G47 -L64 0.0180245837614565 L46 -A58 0.0166016170263932 C37 -L45 0.011409047599459 C37 -R69 0.0113621532031433 A39 -G47 0.00540009250940443 A58 -A67 0.00346717360140314 L45 -L59 -0.00336180420787535 G47 -R57 -0.00661503688186516 L40 -L46 -0.00999962527537868 L60 -R69 -0.0153629912220197 P44 -A61 -0.0218617934288603 F41 -S66 -0.0221767217345405 P44 -A63 -0.0242245799491261 L40 -T65 -0.031480816872886 H49 -L64 -0.0347916898749827 L40 -R69 -0.0417356093247294 Q56 -A61 -0.0445904083278386 R57 -S66 -0.052015371955229 A58 -L64 -0.0529169933099185 L43 -N62 -0.0535555778089356 G47 -T65 -0.0552638578361804 L43 -S66 -0.0571694040336066 L43 -R69 -0.0579413697823039 H49 -A61 -0.0618811844189229 H49 -N62 -0.0637240540699127 L59 -R69 -0.0653076009228224 A39 -N62 -0.0669015995104543 L43 -A61 -0.0691202470019254 C37 -P44 -0.0805945071829064 L45 -N62 -0.0817576091371492 S38 -L46 -0.0829413068685394 P44 -S66 -0.0839720658558001 L48 -T65 -0.0899237960209964 L59 -A67 -0.0916571811548907 Y36 -S66 -0.0932908674612221 A58 -T65 -0.0941850216289906 A39 -R69 -0.104705172841111 V42 -N62 -0.108549980304408 G47 -N62 -0.109792415788945 H49 -T65 -0.114223568740733 L48 -A61 -0.116864860658764 L48 -A63 -0.123946939252805 Y36 -F41 -0.127707391535024 V42 -G47 -0.130358949096439 L59 -L68 -0.135415698700001 P44 -T65 -0.14365243084354 H49 -L60 -0.145744724850294 Y36 -L45 -0.152844429081606 F41 -L46 -0.154879944831665 Y36 -L43 -0.155019249655582 L48 -Q56 -0.160147245110102 L40 -A63 -0.160320879099841 L43 -A63 -0.161684842323139 L46 -A61 -0.164691397237688 L60 -L68 -0.171500492103876 L48 -N62 -0.172426518296995 N62 -R69 -0.173847291164006 L43 -L48 -0.177133284806857 R57 -A63 -0.186703074526245 L59 -S66 -0.188962674973791 L48 -L59 -0.189989517480776 A58 -A63 -0.190532891807361 A63 -R69 -0.199116750330242 A61 -S66 -0.19994738674035 R57 -L64 -0.219771850224358 L48 -R57 -0.219870106647884 L60 -S66 -0.229617557976104 L60 -A67 -0.233715276675021 F41 -N62 -0.235881903870382 A63 -L68 -0.237663876099846 N62 -A67 -0.240396056795402 A61 -A67 -0.242012441629883 H49 -A58 -0.24650674670887 G47 -A58 -0.246743210086492 N62 -L68 -0.251245107431498 A39 -L45 -0.25919123590243 S38 -P44 -0.267331211887824 L59 -L64 -0.267789246240794 L40 -L45 -0.269858629225755 A61 -L68 -0.277155847126725 A39 -P44 -0.279639872057223 C37 -V42 -0.291300016115248 L60 -T65 -0.292246297724637 S38 -L43 -0.295361227935866 L59 -T65 -0.30655891534925 Y36 -V42 -0.323188378422058 P44 -N62 -0.336221989347231 G47 -L59 -0.340345419290752 R57 -N62 -0.364458621562329 C37 -L43 -0.473008132844519