[Fri Aug 26 17:08:11 2016] >Input file: TMP60509M2D.pdb >TM segments: 358-399 MAIDEN score = 2.8501 Below is the ranking list of the residue pairs and their related pseudo-energy (the lower, the better). This includes inter-chain residue pairs. The maximum (least favorable) pairwise energy value has been set to 10. See the MAIDEN software article: Postic,G., Ghouzam,Y. and Gelly,J.C. (2015) Biochimie, 115, 155–161. ----------- ---------------- Calpha pair Empirical energy ----------- ---------------- M373 -Q379 10 H374 -R381 1.32573229649095 M373 -L378 0.884417129590909 I377 -M382 0.860769618923913 E391 -A396 0.768340472143176 V370 -E375 0.707138698180841 D385 -C395 0.653803247245256 Y372 -I377 0.636910759193676 E391 -L397 0.587516412033674 D358 -I363 0.576264313398244 M373 -N380 0.479121047673476 I377 -D385 0.424734628025757 H374 -Q379 0.374388726092674 M366 -H374 0.34715814457754 T388 -L397 0.335790844035772 Q361 -E369 0.333528203774848 L384 -T394 0.332668787285855 V370 -D376 0.311634692709852 A389 -T394 0.301053418593988 T394 -K399 0.263753121941026 G392 -L397 0.259342882116695 Y372 -R381 0.258174452437854 H374 -L384 0.255725075439726 D385 -K399 0.228322851106524 Q361 -N367 0.219296902540961 I377 -C395 0.215136301802692 D385 -A396 0.203528789477815 Y371 -L378 0.193316160025452 I386 -C395 0.189889392751576 L384 -C395 0.185093682453445 Y371 -Q379 0.184235953584023 D376 -A383 0.183934537088756 S364 -M373 0.18361575344706 S364 -Y372 0.168727789565745 V370 -I377 0.163814956892862 D385 -G392 0.161540197756775 Q379 -L384 0.155740391203757 Y372 -N380 0.15537092472363 M366 -D376 0.152193361033681 M382 -I398 0.150996260622342 A383 -G392 0.147043078783226 R381 -A389 0.141375328798963 D358 -N367 0.139617771554967 M382 -G393 0.135411812782476 R381 -E391 0.130642082015153 I377 -I386 0.128242895763993 I377 -I398 0.126906343889359 G392 -K399 0.12435324029529 N367 -E375 0.122765717840979 I386 -A396 0.119750763362038 S359 -A368 0.114330571114576 D376 -M382 0.113637872029396 I377 -G393 0.111648813637509 I377 -T388 0.110831128899659 A368 -I377 0.108200343416989 A368 -L378 0.106398326350762 L365 -Y372 0.100912096739362 Y371 -M382 0.0980071795819777 L384 -A396 0.091369352883623 T388 -T394 0.0904501135811584 R381 -I386 0.0903094093244516 E391 -K399 0.0898216471107744 E369 -M382 0.0897715571385939 I386 -G393 0.0863715935735554 E375 -R381 0.0849153415425716 D358 -L365 0.0849105786186808 R381 -L397 0.0848687963862281 V370 -R381 0.076507408970972 N367 -D376 0.0709880228611648 M373 -R381 0.0695696838240556 M366 -L378 0.0623570844393573 A383 -G393 0.0615019825996734 M366 -M373 0.0611821589703935 D358 -S364 0.0577684839993031 L387 -A396 0.0572332747155881 A368 -Q379 0.0571464693061396 E369 -L378 0.0552774960202305 L384 -A390 0.0495823550933565 M373 -D385 0.0458941920278084 A383 -A390 0.0454682654677183 I377 -L387 0.0436200100410313 Q379 -T388 0.0412629205396877 S362 -V370 0.0406116476191398 Q379 -T394 0.0394564835903439 L384 -G392 0.0382492665800633 E375 -M382 0.0370966542112774 E375 -D385 0.0366098472601819 I386 -I398 0.0358599100257528 Y371 -R381 0.035786982559652 Q379 -I386 0.030455184730553 N367 -Y372 0.0254421380188867 Y372 -L378 0.0244465142717765 M382 -E391 0.0244256287388347 H374 -A383 0.0243782915566282 Y372 -A383 0.0199901713028956 N380 -G393 0.0195689764016178 E375 -N380 0.0186049181286201 S359 -N367 0.0173377216443514 E369 -I377 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-0.102443609593903 R381 -K399 -0.103938446100952 D358 -M366 -0.104690341871105 M366 -Q379 -0.109104241500152 D385 -E391 -0.111653310384024 L365 -M373 -0.120814923676531 M382 -G392 -0.125122806949074 I386 -L397 -0.126327168806011 L387 -C395 -0.126844545744191 L378 -L387 -0.127606026142306 V370 -N380 -0.129873990155018 M373 -L384 -0.130547594623407 A383 -I398 -0.130564937630567 L365 -Y371 -0.134143682166729 I363 -Y371 -0.135042892778312 D376 -T394 -0.138443466937378 S362 -N367 -0.146840962720264 V370 -M382 -0.14928188012483 R381 -T394 -0.149727199380331 N367 -I377 -0.150097007459083 N367 -L378 -0.151256750728087 G393 -K399 -0.151649332672112 I377 -A389 -0.152552680402752 A383 -T394 -0.154371182904811 L387 -I398 -0.154400383960763 N380 -I398 -0.154999747368824 L360 -E369 -0.15724223822511 A389 -L397 -0.159331557890653 A389 -C395 -0.159581491294425 I386 -E391 -0.160158687829279 M366 -Y372 -0.162411394848914 M382 -T388 -0.164377431052583 N367 -M373 -0.164495634278673 L360 -N367 -0.164707297954566 M382 -C395 -0.164935179609241 L384 -I398 -0.170145866567609 D376 -D385 -0.17665043724408 E375 -T394 -0.177087278759017 I363 -V370 -0.191924099974153 Y372 -M382 -0.192972067051258 E391 -I398 -0.194288916553271 I363 -E369 -0.195329999620132 A389 -A396 -0.195722928880832 S362 -A368 -0.19734681498603 A383 -A389 -0.197901744568408 M366 -E375 -0.198411470050154 I377 -T394 -0.198861218006342 T388 -A396 -0.202352333001114 L387 -G393 -0.202721088811328 E369 -E375 -0.203498861488035 D376 -C395 -0.207976808248823 D385 -T394 -0.208569480689545 M382 -A389 -0.21103479907485 H374 -M382 -0.21145840192707 H374 -N380 -0.214517667409051 L384 -K399 -0.214632754244231 I386 -G392 -0.215030978816123 I386 -T394 -0.215041106541703 G393 -I398 -0.215468047319468 M366 -Y371 -0.218984832046243 Y372 -D385 -0.221319544603209 L378 -D385 -0.224590254866684 M373 -A383 -0.22696730419754 R381 -L387 -0.226998333364111 S364 -Y371 -0.229500526336526 D385 -A390 -0.229866523452507 T388 -G393 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