[Fri Aug 26 17:16:23 2016] >Input file: TMP69525M1D.pdb >TM segments: 939-949_ 1045-1060 MAIDEN score = -0.8740 Below is the ranking list of the residue pairs and their related pseudo-energy (the lower, the better). This includes inter-chain residue pairs. The maximum (least favorable) pairwise energy value has been set to 10. See the MAIDEN software article: Postic,G., Ghouzam,Y. and Gelly,J.C. (2015) Biochimie, 115, 155–161. ----------- ---------------- Calpha pair Empirical energy ----------- ---------------- R948 -A1053 0.757050897015809 P946 -A1053 0.609815350420698 P944 -L1056 0.584316949730965 G945 -V1052 0.482265866811273 G945 -V1055 0.366505512563066 L943 -V1052 0.341542147543181 A1053 -G1060 0.326346636919875 A1054 -G1060 0.314899163469815 C942 -V1055 0.30041146604353 L943 -L1056 0.295837639519994 L943 -A1053 0.287321499842116 G945 -A1054 0.276607290263471 P949 -T1050 0.263975316737174 P944 -V1052 0.263475657386546 Y1049 -V1055 0.205912148109189 P944 -T1050 0.182806871949415 C942 -L1056 0.173440162094895 C942 -G1060 0.158723968989527 R1051 -G1057 0.134241691874295 G945 -L1056 0.132500488349996 A947 -A1053 0.118523916903641 T1050 -I1059 0.108642624210253 A947 -G1057 0.106486238436847 P944 -W1058 0.103761599552566 P946 -R1051 0.10241018003964 R1051 -W1058 0.102146037153136 C942 -R1051 0.0979579956352921 T1050 -G1057 0.0947999327006199 P946 -G1060 0.0906264222332496 Y1049 -A1054 0.0902377859385686 G945 -W1058 0.0808921673628067 L943 -G1057 0.0747332781707648 R948 -R1051 0.0727334818244572 I941 -L1056 0.0726321916969281 P944 -G1060 0.0666784897337314 A947 -R1051 0.0637208427911222 P949 -Y1049 0.0630042642083213 R948 -V1055 0.0605201540872624 C942 -A1054 0.0567910214997966 R948 -T1050 0.0441873551542715 C942 -R948 0.0390781290096784 P949 -A1054 0.0348747646498166 P944 -G1057 0.0330355656954766 C942 -G1057 0.0302107202501585 A947 -T1050 0.0264084189730167 C942 -A1053 0.0254821717968507 C942 -I1059 0.024455600533356 L943 -R1051 0.0124831713008877 T1050 -L1056 0.012421552857294 A947 -V1055 0.0106688403612608 P940 -V1052 -0.00210071357556796 P946 -G1057 -0.00404644585595948 L943 -T1050 -0.00662453339448099 I941 -A1053 -0.0173052467166213 C942 -A947 -0.0188299524171009 P944 -V1055 -0.0223180604881881 P940 -I1059 -0.0270274568708411 R948 -Y1049 -0.0271150311450121 T1050 -V1055 -0.0277056803360631 R1051 -I1059 -0.029861541005376 G945 -G1057 -0.0351069691803869 L943 -A1054 -0.0378320541248716 I941 -G1060 -0.0428459576339395 T1050 -W1058 -0.0502766506461635 G945 -T1050 -0.0545769869898721 P949 -V1052 -0.0549090600119744 P944 -I1059 -0.0588516491801752 P949 -V1048 -0.0719342529654877 L943 -P949 -0.0745123825588827 P949 -V1055 -0.0761233294251433 P946 -I1059 -0.0954341619514549 P946 -A1054 -0.104372059756377 V1052 -I1059 -0.104790870242802 P1046 -R1051 -0.110751691659668 A1054 -I1059 -0.112826908091469 L943 -R948 -0.115378878467443 C942 -V1052 -0.140559906282456 I941 -I1059 -0.140697233896151 R948 -L1056 -0.14281517071053 A1053 -W1058 -0.143411408556403 V1052 -G1057 -0.145852216839558 L943 -G1060 -0.148341017208018 P949 -L1056 -0.152558475858526 R948 -V1052 -0.161479621281726 V1052 -G1060 -0.16250672252497 P946 -W1058 -0.16946099813772 A947 -A1054 -0.171985542100104 P949 -A1053 -0.173417863633087 G945 -G1060 -0.174085129590807 A947 -V1052 -0.189536856081709 R948 -A1054 -0.19135139364158 P946 -V1052 -0.192906544632361 P944 -A1054 -0.202162297530924 P944 -P949 -0.203265778086289 G945 -I1059 -0.207598694426343 G945 -R1051 -0.208833327397279 P946 -L1056 -0.211848938990484 I941 -V1052 -0.22008941080194 P946 -V1055 -0.220103977332211 P944 -A1053 -0.220659246676733 A947 -L1056 -0.238992456715246 V1055 -G1060 -0.239347330686373 P944 -R1051 -0.257459500813549 L943 -V1055 -0.262598465621071 R1051 -L1056 -0.276759391115809 L943 -I1059 -0.286573681288415 C942 -P949 -0.297452328812437 L943 -W1058 -0.303772653166893 G945 -A1053 -0.327131594340734 A1053 -I1059 -0.342988084256364 V1052 -W1058 -0.343376159057625 P949 -R1051 -0.39719138465489