[Fri Aug 26 17:19:26 2016] >Input file: TMP86176M11D.pdb >TM segments: 46-53_ 58-64_ 110-115 MAIDEN score = 18.8908 Below is the ranking list of the residue pairs and their related pseudo-energy (the lower, the better). This includes inter-chain residue pairs. The maximum (least favorable) pairwise energy value has been set to 10. See the MAIDEN software article: Postic,G., Ghouzam,Y. and Gelly,J.C. (2015) Biochimie, 115, 155–161. ----------- ---------------- Calpha pair Empirical energy ----------- ---------------- W62 -C111 10 D61 -C111 10 T58 -Y113 1.19946383720602 F50 -Y113 1.00110824771865 W62 -F110 0.702937464368751 D61 -F110 0.566073473291373 W62 -T112 0.482343149775472 K63 -F110 0.436988769117438 D61 -H114 0.415241969607594 H49 -H114 0.409965992915451 Q47 -Y113 0.409078719863509 D53 -T115 0.285918250973229 Q59 -T115 0.262730830484383 C48 -H114 0.261604906775772 D53 -T58 0.256540651751088 V60 -Y113 0.247489580214077 S51 -Q59 0.24664553616101 H49 -T115 0.219541256745277 H49 -T58 0.21440308608057 V60 -C111 0.212568490560478 K63 -T112 0.202637102985891 Q47 -Q64 0.202163314327374 T58 -C111 0.201140742025526 Q59 -C111 0.1969879975933 D61 -T115 0.193195353632819 D53 -Y113 0.172645553116411 D53 -H114 0.132922801827888 C48 -Y113 0.126269907038166 V60 -H114 0.113061408736477 S52 -V60 0.110757771707815 S51 -C111 0.105202981359951 L46 -V60 0.103366915229471 H49 -W62 0.0946729348802262 C48 -F110 0.0888949788133147 S52 -T112 0.0843416498336649 S52 -C111 0.081601974211633 F50 -H114 0.0815707367134433 L46 -D61 0.0768855268479394 S51 -D61 0.0756473066723657 W62 -H114 0.0686301936867784 S51 -V60 0.0674177394707676 H49 -Q59 0.0649978984147837 L46 -T112 0.0521709326733779 L46 -W62 0.0433443219361092 F50 -Q59 0.0414144938322574 Q47 -T112 0.0370369085380773 Q47 -K63 0.0359899495428673 Q47 -D61 0.0327728029103067 Q47 -V60 0.0292327245424424 S52 -H114 0.0286424920934909 S52 -T115 0.00424465566318721 Q64 -F110 0.00290299133771521 F50 -W62 -0.00300433802123967 S51 -T112 -0.0121293238582409 Q47 -W62 -0.0183315859032134 S51 -Y113 -0.0241779536051347 C48 -T58 -0.0272140736469221 F50 -T115 -0.0317617258106062 W62 -T115 -0.0434477288854846 D53 -T112 -0.0487050478409383 C48 -Q59 -0.0498872109841617 D53 -Q59 -0.0532778356851398 D61 -Y113 -0.0542795906617877 C48 -T115 -0.0556529249299887 V60 -T112 -0.077013044342694 F50 -D61 -0.0818718319635523 L46 -C111 -0.0908273068429439 K63 -H114 -0.0929690694655054 S51 -T115 -0.0959769816671394 Q64 -Y113 -0.0960047968773114 K63 -C111 -0.0990585446321726 H49 -T112 -0.105337559338867 S52 -T58 -0.115879784445587 S52 -Q59 -0.118535626404954 L46 -Q64 -0.121783631703726 S51 -H114 -0.124371048316013 D53 -V60 -0.126816801243538 L46 -Y113 -0.127867596042361 H49 -F110 -0.130222504757508 Q64 -C111 -0.13134635853883 W62 -Y113 -0.133251406703405 F50 -F110 -0.14105787953442 Q59 -T112 -0.144288537984271 Q59 -F110 -0.153470435533064 F50 -T112 -0.164309013236535 C48 -C111 -0.166706523672428 K63 -Y113 -0.170572188396596 L46 -K63 -0.182388935706398 V60 -F110 -0.19521520361206 C48 -Q64 -0.198326534041601 H49 -V60 -0.199875494157005 H49 -C111 -0.204788247011369 T58 -T112 -0.207238021108838 V60 -T115 -0.209629349069566 Q64 -T112 -0.211307329634145 S51 -T58 -0.213242875794435 Q47 -C111 -0.215194749726969 C48 -D61 -0.225618927297965 C48 -K63 -0.233799129387031 Q47 -F110 -0.235316966174448 H49 -D61 -0.240495169152532 C48 -D53 -0.2445816656743 L46 -F110 -0.257425742265136 C48 -T112 -0.277106797250065 S52 -Y113 -0.306795994215232 T58 -T115 -0.310415393368658 Q59 -Y113 -0.32153180381703 Q59 -H114 -0.327856275208358 F50 -T58 -0.358025227610256 F50 -V60 -0.361697825855 F50 -C111 -0.373572272108476 D61 -T112 -0.417657176849971 H49 -Y113 -0.434693000860892 C48 -W62 -0.486150167847654 C48 -V60 -0.519751185011081 T58 -H114 -0.691481542223408