[Mon Aug 29 17:27:19 2016] >Input file: TMQ03816S1G.pdb >TM segments: 399-414 MAIDEN score = -0.5593 Below is the ranking list of the residue pairs and their related pseudo-energy (the lower, the better). This includes inter-chain residue pairs. The maximum (least favorable) pairwise energy value has been set to 10. See the MAIDEN software article: Postic,G., Ghouzam,Y. and Gelly,J.C. (2015) Biochimie, 115, 155–161. ----------- ---------------- Calpha pair Empirical energy ----------- ---------------- H409 -Q414 0.32678407202492 T406 -M412 0.0869628239457717 T406 -Q414 0.0213898878460104 I405 -V410 -0.0508838578495219 N407 -Q414 -0.0538302222783791 S408 -L413 -0.0724757559870604 S408 -Q414 -0.0766333470641727 I405 -S411 -0.0843011241156726 T406 -L413 -0.1059120271999 N407 -M412 -0.164928923221984 N407 -L413 -0.167888074179386 T406 -S411 -0.217606733997665