[Mon Aug 29 17:27:36 2016] >Input file: TMQ03817S1G.pdb >TM segments: 399-414 MAIDEN score = -0.4794 Below is the ranking list of the residue pairs and their related pseudo-energy (the lower, the better). This includes inter-chain residue pairs. The maximum (least favorable) pairwise energy value has been set to 10. See the MAIDEN software article: Postic,G., Ghouzam,Y. and Gelly,J.C. (2015) Biochimie, 115, 155–161. ----------- ---------------- Calpha pair Empirical energy ----------- ---------------- H409 -Q414 0.333914898622172 N407 -I412 0.0508136649873503 T406 -Q414 0.0213898878460104 T406 -I412 -0.0502432763997649 N407 -Q414 -0.0536992322302574 I405 -V410 -0.0637274126293796 S408 -L413 -0.0685605517406902 S408 -Q414 -0.0765850450339884 I405 -S411 -0.0840775152484206 T406 -L413 -0.105468450919508 N407 -L413 -0.166858696105058 T406 -S411 -0.216323233631586