[Wed Nov 23 03:59:39 2016] >Input file: TMQ06432E15D.pdb >TM segments: 96-125_ 136-155 MAIDEN score = -19.7060 Below is the ranking list of the residue pairs and their related pseudo-energy (the lower, the better). This includes inter-chain residue pairs. The maximum (least favorable) pairwise energy value has been set to 10. See the MAIDEN software article: Postic,G., Ghouzam,Y. and Gelly,J.C. (2015) Biochimie, 115, 155–161. ----------- ---------------- Calpha pair Empirical energy ----------- ---------------- F117 -L149 0.797709468405719 F113 -V153 0.71657144663986 I110 -S154 0.659490924336571 F113 -S154 0.603778264141735 F117 -A145 0.525332631340702 I110 -V153 0.470069625771636 A109 -S154 0.408613145433299 C124 -R138 0.391384790586542 G116 -Y144 0.354344727321343 V125 -S141 0.344248723294217 A107 -S154 0.313940816504465 L120 -V125 0.307100944271483 C124 -G148 0.301464508821297 I119 -C150 0.290142844328174 L120 -A145 0.278809116161455 I112 -S154 0.247549592907818 L120 -G148 0.242881618077199 G116 -A147 0.222129632530841 S122 -G148 0.21653005439408 S141 -G148 0.18483905614838 A111 -I118 0.170401215211804 A140 -F146 0.164146836813325 I118 -G148 0.154464603516789 I110 -C150 0.154354141082655 S122 -F146 0.150246448118315 A147 -V155 0.147644810028722 E102 -I110 0.146843188740183 L115 -C150 0.141841126732038 A108 -G116 0.138398974393814 S114 -V153 0.138228672264748 V125 -A147 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