[Fri Aug 26 17:44:37 2016] >Input file: TMQ0RN80M1D.pdb >TM segments: 385-457 MAIDEN score = 40.6360 Below is the ranking list of the residue pairs and their related pseudo-energy (the lower, the better). This includes inter-chain residue pairs. The maximum (least favorable) pairwise energy value has been set to 10. See the MAIDEN software article: Postic,G., Ghouzam,Y. and Gelly,J.C. (2015) Biochimie, 115, 155–161. ----------- ---------------- Calpha pair Empirical energy ----------- ---------------- G389 -S395 10 S440 -A450 10 S440 -G451 9.66243117447988 A442 -I448 2.06936615204465 L428 -V434 1.26033149409037 T390 -V396 1.20340979236436 V396 -A412 1.14822641140146 E427 -V434 1.14180000174161 L428 -L433 0.93049260013581 V404 -L409 0.903002120288662 V387 -V414 0.864147889918666 L422 -L428 0.747577224923742 L422 -V434 0.728889556870276 L388 -S395 0.728152224056583 V392 -L397 0.664713688032732 L388 -L393 0.637859413457385 A423 -V434 0.637776539226236 S440 -S452 0.635794078736245 L397 -V410 0.582458336005745 G451 -F456 0.576738485577712 S441 -G451 0.576105280667434 L397 -S403 0.573530210561719 A391 -L397 0.536600932413553 S440 -F456 0.516123995755921 T438 -A454 0.504654333937198 A450 -F456 0.489530459585381 A423 -V429 0.474170057516948 S399 -V410 0.473129897460817 L388 -V414 0.460662027518748 V387 -G394 0.458387295190446 E427 -G432 0.431997567654391 R421 -L428 0.431621979974216 A450 -M457 0.429586060290084 R421 -V434 0.427214264519644 V392 -A412 0.421817438344106 S403 -V410 0.394917567877862 V387 -A419 0.392353605977671 L393 -A412 0.390279601630787 A398 -V404 0.38947449225865 V387 -P415 0.374977239520332 S441 -A447 0.369687267808558 A437 -A455 0.364117719409242 V387 -L393 0.350112345844188 A442 -E449 0.349297196173361 G451 -M457 0.347621266732141 A398 -G411 0.337534594775836 G439 -A450 0.332240812432101 A398 -G413 0.327541776506413 S440 -A455 0.322597888561228 S395 -A419 0.318472353704094 G385 -A412 0.318410455279444 T390 -S395 0.31527238567441 A419 -Q424 0.314104605738908 S441 -E449 0.313155310089401 L397 -V404 0.309906370400459 S399 -A412 0.306456127414246 S440 -A454 0.302362250787773 A437 -S452 0.294890451674624 E449 -M457 0.287481639782988 G439 -A447 0.286982939053199 A398 -L409 0.286934230866424 T438 -E449 0.275749511714993 Q418 -E427 0.269103879335853 L393 -G413 0.267073304253406 A391 -R400 0.2643316867054 L388 -G420 0.263688082666999 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