[Mon Aug 29 17:47:50 2016] >Input file: TMQ0Z7W6S1G.pdb >TM segments: 56-74_ 77-85_ 91-114 MAIDEN score = 1.2665 Below is the ranking list of the residue pairs and their related pseudo-energy (the lower, the better). This includes inter-chain residue pairs. The maximum (least favorable) pairwise energy value has been set to 10. See the MAIDEN software article: Postic,G., Ghouzam,Y. and Gelly,J.C. (2015) Biochimie, 115, 155–161. ----------- ---------------- Calpha pair Empirical energy ----------- ---------------- C106 -F111 10 T102 -Y114 1.26157176575239 A58 -P101 0.957601040083213 C106 -R112 0.926034475170948 C59 -L100 0.750831281736727 E74 -V80 0.716316714123946 A70 -N79 0.561605128850257 C56 -L100 0.542874341054326 G73 -N79 0.539955963799349 I103 -Y114 0.497087256186013 E65 -P101 0.485936595522711 H105 -F111 0.417326528738849 H105 -R113 0.416334539922777 K82 -P101 0.411351579539934 V83 -L91 0.407165142157734 V85 -L91 0.399288778690991 C59 -P101 0.371345751966388 C56 -K82 0.363669433108027 W66 -P101 0.363277486212162 S92 -P101 0.363176877970504 F69 -E77 0.338562230402732 D84 -L91 0.337476326681678 P64 -E71 0.326453534928453 I97 -T102 0.319793462746257 G73 -H105 0.298138042714411 C56 -V83 0.281168884000766 R94 -C106 0.280827694388677 T102 -R113 0.279747701476702 A58 -L100 0.279088107436036 Q60 -E67 0.27818177046801 C56 -T102 0.273808443929637 A58 -A99 0.268391245572403 V80 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