[Mon Aug 29 16:55:41 2016] >Input file: TMQ1M7S5M8G.pdb >TM segments: 377-407_ 505-519 MAIDEN score = 1.5488 Below is the ranking list of the residue pairs and their related pseudo-energy (the lower, the better). This includes inter-chain residue pairs. The maximum (least favorable) pairwise energy value has been set to 10. See the MAIDEN software article: Postic,G., Ghouzam,Y. and Gelly,J.C. (2015) Biochimie, 115, 155–161. ----------- ---------------- Calpha pair Empirical energy ----------- ---------------- R386 -L391 1.64445694176667 S400 -F405 1.39401275974404 I388 -I399 1.18725367376988 L385 -D512 0.889992048865986 F398 -V406 0.880319107416642 V401 -V406 0.77559605311491 L385 -L510 0.702453655657011 F398 -F405 0.546368437691829 R393 -I399 0.472605166690421 S400 -G407 0.470232886039049 V401 -K507 0.422420449554881 R386 -L510 0.408706283613196 I399 -V406 0.396200608815741 K381 -E513 0.375064648739355 H390 -S400 0.370377593907806 H390 -G407 0.361016470650501 I399 -F405 0.351502430599791 R393 -G407 0.316278984566511 N389 -K507 0.315778519714298 L385 -E392 0.31447128793359 H390 -G397 0.309745505928125 A387 -I399 0.295145640933424 A387 -S400 0.281607521552777 S379 -L384 0.2638793527925 D404 -V508 0.263471423858096 S382 -H390 0.262967604578134 N389 -L510 0.241816605226048 N389 -L509 0.240885851972817 L385 -P514 0.232291260393111 F398 -G403 0.228123145643861 L384 -E392 0.228062175213765 L385 -F511 0.207237238492862 T383 -I399 0.204998637774996 R386 -D512 0.201113859081923 S400 -P506 0.201086485795112 S382 -N389 0.195265949759978 G397 -V406 0.195205602728191 A387 -V394 0.189114730046981 N389 -F405 0.187985828036771 H390 -K507 0.17994038829577 P514 -D519 0.177705945542281 H390 -V406 0.173944939804377 T383 -L510 0.163440895347664 H390 -E396 0.159182777936912 S382 -P514 0.155137393048083 D402 -P506 0.153898583224614 H390 -L510 0.15291924229675 L385 -G407 0.152506027408975 S400 -V508 0.152117610613699 N389 -D404 0.151376896213933 N389 -D402 0.150036282908039 N389 -D395 0.148763005092371 L384 -G397 0.145491400842543 R386 -E392 0.144738798880764 I399 -G407 0.14319932604166 K381 -E392 0.142171208131535 R393 -F405 0.134171252754864 R386 -F398 0.128941470444623 R386 -E396 0.128847085075836 G380 -E392 0.128019133157438 I388 -G407 0.127590968464915 G380 -R386 0.125762538455242 I388 -V394 0.124530929302198 G380 -E513 0.123595016340002 V406 -P506 0.122515046006469 S377 -T383 0.117982121442966 I388 -R393 0.11367752154759 G380 -V394 0.112735321354181 G378 -E513 0.110875331755468 D395 -G407 0.108670719738609 G403 -V508 0.107779649944773 A387 -V508 0.106874049409479 L384 -L509 0.106000702800549 V401 -G407 0.101546944948511 L385 -V401 0.100921202899317 L384 -V508 0.098488491165142 G403 -K507 0.0979352375400402 T383 -D395 0.093917897067973 S382 -E392 0.089747062633464 L384 -G407 0.0847534213448418 N389 -V401 0.0838454864733823 A387 -E392 0.082925987515627 S382 -S516 0.0826670028112835 S377 -T515 0.0800292776534818 G378 -L384 0.0790779798786678 S379 -L385 0.0789640697509091 K381 -D512 0.0763983173949501 R386 -V508 0.0763974880892433 V401 -L510 0.0751060039604767 G397 -G403 0.0745097487239089 V394 -S400 0.0737881419101001 E513 -L518 0.072967092902676 L385 -F398 0.0722037936013482 D512 -A517 0.0720305637667948 I388 -S400 0.0715491277457572 N389 -V394 0.0714719956315062 L385 -R393 0.0695114517552643 I388 -E396 0.0641677897484154 N389 -G397 0.0634391710646468 L391 -F398 0.0624339379846415 A387 -L509 0.0621731916167003 T383 -F398 0.0615069949969003 S379 -D512 0.0605151601769776 E392 -G397 0.0598721390002634 I388 -V401 0.056981170368374 S377 -L384 0.0526114194915805 I399 -D404 0.0503170976769107 H390 -V508 0.0483015958842303 F511 -L518 0.0461280744077461 S377 -S516 0.0443158856712933 G378 -L385 0.0441431898351308 L509 -P514 0.0434046535963848 K381 -T515 0.0426597549705651 F405 -K507 0.0412702468662882 T383 -G397 0.0412393774992115 L384 -D395 0.0405163884110857 G380 -D512 0.0399746182471041 R386 -V406 0.0391462222559709 I388 -P506 0.0383656589581225 E392 -F398 0.0350493755747685 V401 -P506 0.0331334029253525 N389 -S400 0.0323994473199387 N389 -R505 0.0322344867269737 K381 -S516 0.0317518858680579 A387 -F405 0.0315480181813954 N389 -D512 0.0286774884728724 I388 -G397 0.0280273162249598 L385 -V406 0.0276333892523732 L384 -N389 0.0266328705499297 A387 -G397 0.0259307390121766 A387 -V401 0.0255446673585835 R386 -R393 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