[Mon Aug 29 16:56:21 2016] >Input file: TMQ1M8D7M1G.pdb >TM segments: 288-303_ 305-340 MAIDEN score = 6.0661 Below is the ranking list of the residue pairs and their related pseudo-energy (the lower, the better). This includes inter-chain residue pairs. The maximum (least favorable) pairwise energy value has been set to 10. See the MAIDEN software article: Postic,G., Ghouzam,Y. and Gelly,J.C. (2015) Biochimie, 115, 155–161. ----------- ---------------- Calpha pair Empirical energy ----------- ---------------- I329 -Q334 10 A328 -V337 1.15657151709319 I329 -L336 1.144850747057 A328 -E335 0.915098687236616 V330 -L336 0.912602236144402 I329 -V337 0.81391163671273 F299 -Y305 0.789356635269122 P298 -L303 0.523446277743491 I329 -E335 0.467601448218874 A328 -P338 0.46557288085919 Y305 -T311 0.378560690659501 Y305 -W310 0.369431334334565 I329 -P338 0.368326296789109 A328 -L336 0.358421102477154 G295 -Y305 0.355039232475706 L294 -F299 0.339187483931607 V330 -E335 0.322916596565036 V330 -V337 0.321405917772741 V331 -L336 0.255304641847282 P298 -L308 0.231646247578631 G295 -L302 0.225399078332096 S324 -P338 0.203385278045061 A323 -A333 0.201928343717499 E335 -R340 0.201545851098872 I289 -G295 0.193138330056464 S315 -S324 0.189467647836402 G295 -L303 0.183728630200275 A325 -Q334 0.182656249367102 S292 -I297 0.17907067568844 I329 -G339 0.178538922065898 I297 -A306 0.165109810604868 T311 -G319 0.161193564168943 L301 -W310 0.158610931646891 S315 -F322 0.157340086930807 V316 -I321 0.150761286834962 A328 -R340 0.148815386961007 G319 -A325 0.146356520007063 G295 -A306 0.137731155287553 L303 -W310 0.137170402111209 A300 -F309 0.134594794281973 S292 -A300 0.133709541524374 S324 -V337 0.131878427192862 S324 -V331 0.128393198201607 A333 -R340 0.12522757786946 V317 -A323 0.123114859882081 L294 -L303 0.12003241476158 F326 -F332 0.119348580904585 I321 -S327 0.116586778096633 A300 -G312 0.115192224629364 F322 -Q334 0.10815877609137 V313 -L320 0.105092927058976 S324 -A333 0.104142997970805 F326 -V331 0.100513347332448 A300 -A306 0.097849995751559 L303 -L308 0.0967331075705766 I293 -L308 0.0938017842234385 L320 -A325 0.091737326834509 N307 -V313 0.0879469558033218 S327 -V337 0.0864751374193968 V316 -A323 0.0797813553530791 F309 -L314 0.0797487127155374 V317 -S324 0.07619428690428 G312 -G319 0.0758126724624999 I297 -N307 0.0751479762875144 V296 -T311 0.0734975693864701 A323 -V331 0.0728660544378115 L301 -T311 0.0662723921386614 A325 -G339 0.0643133725995404 G319 -F326 0.0584476264906915 V296 -N307 0.0578977595402259 L308 -S315 0.0573622659199098 F299 -T311 0.0563682100951493 W310 -G319 0.0559999022720119 S327 -G339 0.0544400344758693 P298 -N307 0.0543042509145542 I293 -T311 0.0530965896095429 A306 -G312 0.0522864564134 L301 -N307 0.0498342737762325 L301 -L308 0.0484733127710493 A323 -Q334 0.0472047306538448 N307 -L314 0.0453318497844091 V317 -F322 0.0442565111319055 A325 -L336 0.0417638945041481 T311 -V316 0.0411980190434096 F326 -G339 0.0411276945065486 F309 -V316 0.0407656845988642 V330 -R340 0.0399585518230896 Q334 -R340 0.0394914524068457 F299 -W310 0.0393381129279675 F326 -P338 0.0380670746057614 F326 -A333 0.0376063790340204 S324 -E335 0.0335453285596827 V331 -G339 0.0307960379311716 I321 -F326 0.0286940331557264 L320 -F326 0.0279424091671954 G312 -L320 0.0268287968913441 A325 -A333 0.0247734627927123 W310 -I318 0.0244518295725524 F326 -Q334 0.0186743301981067 F322 -S327 0.0146838847674291 I329 -R340 0.013236190599577 F291 -I297 0.0117901425774107 W290 -F299 0.011297769470453 I321 -I329 0.00879568092213656 I293 -L303 0.00788536063386225 Y305 -V313 0.0069122077791981 V331 -P338 0.00639966556833005 T311 -L320 0.00388231289367602 S327 -E335 0.00159683871232918 A333 -G339 0.00102015939948341 L302 -T311 0.000870473043171671 A325 -V331 0.000219595677904749 L320 -S327 -0.000871548957688553 F332 -R340 -0.00504192454174535 N307 -S315 -0.00687141542993253 V296 -A306 -0.00739205613521166 L302 -W310 -0.00915013878728477 L301 -A306 -0.00943938877721373 S324 -I329 -0.013904559243068 I321 -A328 -0.0152456050046083 Y305 -G312 -0.016708663382494 S327 -Q334 -0.0187810212473623 V296 -S315 -0.018988363049992 V316 -S324 -0.0207880120603604 Q334 -G339 -0.0223852774806472 W290 -G295 -0.0229970288693169 F299 -A306 -0.0237273947223411 A325 -P338 -0.0269297486778792 A325 -F332 -0.0295184901519798 I297 -W310 -0.0301359525367957 F291 -P298 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-0.0758720252597511 W310 -S315 -0.0771859323339115 I297 -L308 -0.0772643072524075 V296 -L314 -0.078442204281683 F322 -V331 -0.0785992403813731 V288 -V296 -0.0798349125112157 S324 -F332 -0.0805191985898736 I318 -A325 -0.0828780381714012 I289 -I297 -0.0843011074188746 L303 -F309 -0.0865842983925158 F322 -A328 -0.0890897235372501 A323 -E335 -0.0925527903587285 A325 -E335 -0.093660938114557 S327 -F332 -0.0956891586629726 F291 -F299 -0.0971009572390238 L314 -I321 -0.0975003287438205 L294 -Y305 -0.098234596377047 F322 -A333 -0.101248826052625 V316 -F322 -0.103023983935663 Y305 -L314 -0.103803759489358 L308 -V316 -0.10505478091803 V313 -I318 -0.108344912157678 I289 -L294 -0.109689504960441 G312 -V317 -0.11216848489499 F299 -N307 -0.112292187816183 A300 -L314 -0.113867233316382 I289 -P298 -0.122038185883326 W310 -V317 -0.122335987094914 V313 -I321 -0.123882351286425 N307 -G312 -0.124300361232919 A306 -L314 -0.124404724812862 I318 -F326 -0.125272586642697 A323 -L336 -0.127574500381678 L302 -N307 -0.127621289411026 V288 -I297 -0.131796852242532 S292 -P298 -0.131908574625466 F291 -A300 -0.132415637106168 V313 -G319 -0.14008160139203 F291 -V296 -0.14124115787973 V296 -L303 -0.141836276710325 V288 -G295 -0.14382254078573 G319 -S324 -0.150116931563687 L302 -L308 -0.152284340516374 T311 -I318 -0.15278562204782 P298 -Y305 -0.153784211884715 I293 -L301 -0.154384868330051 A325 -V337 -0.155122394494538 I297 -Y305 -0.156090474777766 G295 -L301 -0.15928631074544 A333 -P338 -0.160593887102684 A323 -A328 -0.161936242924815 S315 -I321 -0.167295999649531 A300 -N307 -0.167446572688585 S324 -Q334 -0.172333140966608 P298 -A306 -0.172637168375681 A300 -W310 -0.176513284315504 L294 -L301 -0.178051979483461 F332 -G339 -0.180864666290141 W290 -V296 -0.182532581250731 A306 -T311 -0.188365703079287 S292 -L301 -0.189325194927307 I318 -S324 -0.197831028603764 S327 -A333 -0.19831866543449 V296 -W310 -0.201970630288465 I297 -L302 -0.20258777778108 V330 -G339 -0.203496039082035 L294 -L302 -0.207160734092777 L314 -L320 -0.208681850752325 A300 -T311 -0.214059799521841 F322 -I329 -0.220018003330301 V296 -L302 -0.221335544510556 I297 -L303 -0.221674855453522 W310 -V316 -0.22747832649096 V296 -L308 -0.2342300774247 V288 -L294 -0.237644210743771 A328 -A333 -0.238932030759226 A328 -G339 -0.240988896854761 G312 -I318 -0.243358510919366 T311 -V317 -0.246667157545902 A323 -V330 -0.257248303561513 A300 -L308 -0.261020297675416 I293 -A300 -0.261046275272224 F326 -L336 -0.266924130711829 S327 -P338 -0.274733875691669 V331 -R340 -0.28242030951695 S324 -V330 -0.311308250378551 W290 -I297 -0.333408601898888 S315 -L320 -0.335710488550919 F332 -V337 -0.344974095998049 V331 -V337 -0.346421151718849 A323 -I329 -0.351005099123492 S327 -L336 -0.35903476694314 L308 -V313 -0.361857832385784 A300 -Y305 -0.365598404293912 F326 -V337 -0.366613278794166 V296 -Y305 -0.3863930842867 L314 -G319 -0.420406834108606 G295 -A300 -0.44294234537306 V296 -L301 -0.445550798133075 A328 -Q334 -0.446834689033867 I289 -V296 -0.465998137101721 V288 -I293 -0.479702346782775