[Mon Aug 29 16:59:48 2016] >Input file: TMQ1MBL5M1G.pdb >TM segments: 198-204_ 227-233 MAIDEN score = 10.4976 Below is the ranking list of the residue pairs and their related pseudo-energy (the lower, the better). This includes inter-chain residue pairs. The maximum (least favorable) pairwise energy value has been set to 10. See the MAIDEN software article: Postic,G., Ghouzam,Y. and Gelly,J.C. (2015) Biochimie, 115, 155–161. ----------- ---------------- Calpha pair Empirical energy ----------- ---------------- I198 -E233 1.38959777604505 V199 -L232 1.30671174032247 I198 -L232 1.14950657965652 W201 -F228 0.98768799853542 F203 -F228 0.907775283273476 W201 -L229 0.823731659043919 N202 -L229 0.784868121790781 T200 -L232 0.778057964627433 W201 -A231 0.68483563665806 F203 -V227 0.642545922301134 I204 -V227 0.639751257863818 N202 -V227 0.605132782673149 I204 -F228 0.556526241840516 F203 -L229 0.396242488092113 I198 -A231 0.384044409119602 T200 -A231 0.333630232088343 T200 -L229 0.307189513011568 N202 -G230 0.176262051055099 N202 -E233 0.159665071394322 F203 -A231 0.0772832166001454 W201 -L232 0.0755905033616759 I204 -G230 0.0261568532491072 V199 -F228 0.00599195044901624 V199 -G230 -0.00833821948332947 T200 -V227 -0.0133210389880221 I204 -A231 -0.017674981883803 T200 -E233 -0.0315676562207576 V199 -E233 -0.0316018516185541 I204 -L229 -0.0347080749260709 N202 -L232 -0.0392837399043183 I198 -F203 -0.0628080384886092 N202 -A231 -0.0677348050749789 W201 -G230 -0.0769550524977336 I198 -L229 -0.0928656737635468 W201 -E233 -0.113449667399031 I198 -G230 -0.124832640452313 V199 -L229 -0.136471730626312 N202 -F228 -0.176983692727142 F203 -G230 -0.178043714836099 T200 -G230 -0.28155128743038 W201 -V227 -0.336623003024973 T200 -F228 -0.428185918393456 V199 -A231 -0.448226479448155